Phragmites australis (common reed): 133901648
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Entry
133901648 CDS
T10575
Name
(RefSeq) transcription initiation factor TFIID subunit 2-like
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133901648
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
paua01002
]
133901648
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133901648
03036 Chromosome and associated proteins [BR:
paua03036
]
133901648
Peptidases and inhibitors [BR:
paua01002
]
Metallo peptidases
Family M1
133901648
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133901648
Coactivators
SAGA/TFTC/STAGA complex
133901648
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
133901648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
133901648
NCBI-ProteinID:
XP_062199068
LinkDB
All DBs
Position
20:complement(9734466..9749712)
Genome browser
AA seq
1363 aa
AA seq
DB search
MAKARKQKGDAAGGGATVLHQKLCLSIDMENQLINGYTEIKVLLAENDTFALHADNMTIR
SILVDGESVEFEYSPHWKSDGDQPNWSLVSCSKTAADVACSTYISSLNREAIPNLIVSSE
RSVKSITEQQLDENSEKHEENSGRLEEHGGKSVQSCIDQAVNGCNGSAVKEEKEKEKEKE
NENRNEKDKENGIETENEKVKNIKLVHIDYILEKAETGVHFVGNVLHSSSQIKRTHCWFP
CFDTATQRCPFDLEFTVSTNLVAVSNGDLLYQVLSKEDPSRKTYVYKLNTPVSAQWISLV
VGPLEVLPDRNDISASHICLSPALSKLENTIAFFHDAYSCYEDYLATPFPFGLYKQIFLP
SEMTVSPTSLGASTCIFSSDILHDEKVIDQIIGTRIRLAYALSKQWFGIYTSAEEPNDEW
LLDGLAGFLTDLFIKRYLGNNEARYRRFKANCTVCESDVSGATALSSPAASSDLYGTQTI
GSYGKIRSLKAVAVLQMLEKQMGPDSFRKILQVIVAPNRASRTLSTKEFRHLANKVGNLE
RPFLKEFFPRWVESCGCPAMRLGMSYSKKRNMIEFAISRGCTAKAAPDSDSLANGDIQEG
DAGWPGMMSIRVHETDGAYDHPVLSMAGEALQVVEIQCHSKLAAKRIWKSKKSSKVDGSD
DNVDASTQENRTSIDSPLLWIRVDPEMEYLAEVHFYQPVQMWINQLEKDKDVISQSQAIS
ALEKLPQLSFAVINALNNFLNDTKAFWRVRVEAAYALAVTASEATDLVGLLHLVNFYKSR
RFDADIGMPRPNDFHDIPEYFVLEAIPHAVALVRLSDKNSPREAIEFILQLLKYNDNNGN
IYSDVYWLSAMVQSIGELEFGQQGIGLLSSLLKRIDRLLQFDNFMPGYNGVLTVSCIRTL
ARIAARVSSSICLDRICELIAPFRNLDKPWKVRIEASRVLIDLELHQKGLDAALLLFLKY
VDEEKSLRGATKLAVHVLRICQASVDLHLNDQIKLTTLVGLLYLFAGMKAYNNVFLRHHV
FCILQVAAGRSPTLYGVPKVVTPPPVVQDICSDQQTKADSSIPQPSKPQEPSTSTPSVRE
VVPTSGPTKDADNQSNCSERRNVVKIRVRRTASSSKASDADHRDHSHGGRNENEAGACSS
MSVDAPMVGAANEPLNVSNHNIEEQNSCHDLESRMSASVSNVKLMDRHEISKELQCTAHS
RLDALPKDQFSPLTNPLEVVDKPGSQLEGVSTSCDGNQAPESMNGLESKERKKKDKKDKK
RKRDKKDDPEYLEKKRLKKEKKRMEKESARKQQESEGVPCSEQQNIVKSSGSQEVLPARP
PAPVRSSEPQVSSKETTIDTAQTTVKPKIRIRVKPLQRKAEGS
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggcgaggaagcagaagggcgacgccgccggcggaggcgccaccgtgctccac
cagaagctgtgcctctccatcgacatggagaaccagctaatcaatgggtacactgagata
aaggttcttctagccgagaatgacacttttgctctacatgctgacaatatgacgatcagg
agtatactggtggacggtgaatctgttgagtttgagtattcccctcattggaaaagcgat
ggtgatcaaccgaattggtctttggtatcatgttcgaagactgctgctgatgttgcatgt
tcaacatacatttcgtctctaaatagagaagctatacctaatcttatcgtatcatctgag
agatcagttaagtcaataactgagcaacagttggacgaaaacagtgaaaagcatgaagaa
aatagtggaaggcttgaggaacatggtggaaagtctgttcaaagttgcattgatcaagct
gttaatggctgcaatggttctgcagtgaaagaggaaaaggaaaaggaaaaggaaaaggaa
aatgaaaatagaaatgaaaaggataaggaaaatggaattgaaactgaaaatgaaaaggtg
aagaacataaaactggttcacatagattatattttggagaaggctgaaactggtgttcac
ttcgtcggcaatgtcctgcatagtagtagtcagataaaacgcacacactgctggtttcct
tgctttgatactgccacacaacgctgtccatttgacctagagtttacagttagcacgaat
ttagtcgctgtcagcaatggtgacttgctttaccaggtcctaagcaaggaagatccttca
agaaaaacttacgtgtataaattgaacactccagttagtgcacagtggatatccttggtt
gttggtccacttgaagttctccctgacaggaatgacataagtgcctcacacatatgtttg
tcccctgctttgtcgaagcttgagaacacaattgcatttttccatgatgcatatagctgt
tatgaagattatcttgctacaccatttccctttggtttgtacaagcagatttttcttcca
tctgaaatgacagtatcaccaacaagcttaggagcctccacatgcatcttcagttcagat
atcttgcatgacgagaaggttatagatcagataattggcacaagaatcagactagcttat
gccctttcaaagcaatggtttggtatatacacaagtgcagaggagcccaatgatgaatgg
ctgttggatggtttggctggttttcttactgatctatttatcaaacgttaccttgggaat
aacgaggcacgttataggcggttcaaggctaattgcactgtgtgtgagtctgatgttagt
ggtgcaactgctctgagctctcctgctgcttcaagtgatttatatggaacccaaacaatt
ggttcatatgggaaaattcgttcattgaaggcagtagctgttcttcaaatgttggagaaa
cagatgggaccagactcctttcggaagattttgcaggtgatagtggctccaaatcgtgcc
tcaagaacactaagtacaaaagagttcaggcaccttgcaaataaggttggtaaccttgaa
cgcccgttcctgaaagaattctttccacggtgggttgaatcttgtggatgtccagctatg
agattgggaatgtcgtatagcaaaaaaaggaatatgattgaatttgccatttcaaggggt
tgcacagcaaaagctgcacctgattctgatagtcttgcaaatggtgatattcaagaaggt
gatgctggatggccaggaatgatgagcatacgtgttcatgaaactgacggggcgtatgat
catccagttctgtcaatggccggtgaagctttgcaggtggtggaaatacagtgccattcc
aaactagcagcaaagcgcatttggaaatccaaaaaaagctcaaaagttgatggttctgat
gacaacgtagatgcctctactcaagagaaccgcacaagcatagattcacctttactatgg
atcagagtggacccggagatggaatatcttgctgaggtccatttttaccagcctgttcag
atgtggatcaatcaattggagaaagacaaagacgttatatcacaatcacaggcaatatct
gccctggagaaattacctcagctctcttttgctgtgattaatgcactcaataatttccta
aatgacacaaaggccttttggagagttagagttgaagcagcatatgcattagcagttaca
gcatctgaggcaactgatttagttgggttgcttcatcttgttaacttctataaaagccgt
cggtttgatgcagatattggaatgcccaggcccaacgacttccatgatatcccagaatac
tttgttcttgaggcaatcccccatgcagtagctcttgttagattgtcggacaagaatagc
ccaagggaagccattgagtttattcttcagctcctaaagtacaatgataacaacggaaat
atttactcagatgtgtactggctatctgcaatggtacagtcaataggcgaactggaattt
ggtcagcagggcataggcttactatcttctcttcttaagagaattgatcgactcttgcaa
tttgacaactttatgcctggttacaatggggtcttgactgtcagctgcattcgtaccctt
gcacgaatagcagcgagggtgtcatcttccatatgccttgatcgcatttgtgaactaatt
gccccctttcgcaacctggacaaaccatggaaagttcgtattgaagctagcagggttctt
attgatcttgagttacaccagaaaggccttgatgcagctcttttgttgttcttgaaatat
gtggatgaagaaaaatctttgcgaggagcgacaaagttggctgttcatgtcttgcgtata
tgtcaagcgagtgttgatcttcaccttaatgatcaaataaaattaacgactctggttggt
cttctttacctgtttgctggcatgaaggcatacaacaacgtatttcttcgtcatcatgtg
ttctgcatattgcaagttgctgctggaaggtccccaacattatatggtgttccaaaggtt
gtcaccccccctccggtggtccaggacatatgtagtgatcagcaaactaaagctgattcc
tcgattcctcaaccatcaaaacctcaagaaccttccactagcactcctagtgtccgcgag
gtcgtacctacctccggacccactaaagatgctgataatcaatctaactgcagtgaaaga
aggaatgtcgtcaaaattagggtgagacgtactgcatcttccagtaaagcatctgatgct
gaccacagagatcattctcatggtggaagaaatgaaaacgaagcgggtgcatgtagttct
atgtcagtggatgcccccatggttggagcagcaaatgagccattaaatgtaagcaatcat
aacattgaggaacagaactcgtgtcatgaccttgaatcaaggatgtctgcaagcgttagc
aatgttaaactaatggacaggcatgaaatttccaaggagctacagtgcaccgctcattca
aggctagatgctcttcccaaggatcagttctctcctctcactaatccgctggaagttgta
gacaagcctggtagtcagcttgaaggggtctccaccagctgtgatggaaaccaagctcca
gaatctatgaacggactggaatcaaaagagaggaaaaagaaggacaagaaagataaaaag
cgaaaacgagataagaaagatgaccccgagtatctggagaaaaagagacttaagaaggag
aagaaaagaatggagaaagaatcagccagaaagcagcaggaaagtgaaggggttccttgt
tccgaacagcagaacatagtgaaatcttcaggatcgcaggaagttttgccggcgaggcca
ccagctccagtgcgaagttctgaaccccaagtttcaagcaaggaaacaactatagatacc
gcacagacaacagtgaagccaaagataagaatcagagtcaagcccttgcaaagaaaagct
gaaggaagttga
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