Phragmites australis (common reed): 133901691
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Entry
133901691 CDS
T10575
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
paua Phragmites australis (common reed)
Pathway
paua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133901691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133901691
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133901691
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
AAA_22
Agenet
Cadherin_2
Tudor_3
Tudor_KDM3B
Motif
Other DBs
NCBI-GeneID:
133901691
NCBI-ProteinID:
XP_062199123
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Position
20:complement(9833342..9842677)
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AA seq
1312 aa
AA seq
DB search
MASSASRRLSNGRSPLVRKQSQITAFFSSSSSPSPSPSPAAPNPGTSKPSPSPLNPATKR
RPPLAVPSPCAPKPPSLNEGKKKKEKDKKGERAASAVAAPAAEVVGRRLRVFWPLDDAWY
EGRVEAYDGGSRRHRVKYDDGDEEEVDLGKEKFEWAASEESTLPLQPARKLRRLRRMSDT
AVEKSPVVAEEGEDETGDSTEDEDWKKDAATEDDSDEVELDDEEDEEVVAVRSRKGKLRN
SLPISGSARSTLGSGLTSASGSTISKKRKKVDVGTLDCAKKFSFETVNTTGKVESEVPMS
CERRKQTTEKVPTTLTGEAAERFGQRDAEKFKFLGEWRKDAKGRRPENPGYDPRTLFLPF
QFLKNLTGGQRQWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCG
FPEKNLSVNLEKLAKKGYRVLVVEQTETPDQLELRRKEMGIKDKVVRREICAVVTKGTLT
EGESLLTNPDPSYLLSVTESYQHSSKKSQDACTVGVCIVDVSTCKFIVGQFQDDPERHGL
CSILSEMRPVEIIKPANMLSPETEKALKNNTREPLINELLPSMEFWDAEKTIHEIKQYYS
SAEKPNTVDDAQNSVGCLPNLLSELIGAGDRTYGLSALGGCLFYLRQTLLDEKILPCAEF
EHLACSGLINNIRKNMILDAAALENLEMLENLRTGGLSGTLYAQLNHCVTGFGKRLLKRW
IASPLYDRRAILQRQSAIATFKGAGHEYAVKFRKDLSRLPDMERLLARLFSSCDESRRSS
AVVLYEDASKRLLQQFTSALRGCQQMFQACSSISMLICTEGSQLNDLLSLGTGLLNVSSI
LDCFRDAFDWSEADRNGRIIPREGCDPEYDATSHAIEEIESSLKEYLKEQQKLLRHASVN
YVNVGKDIYLIEVPESLGGSVPGNYELQSTKKGFYRYWTPEVKELISELSKAEAEKESKL
KGILQKLIQLFVEHHSEWRQLVSVVAEIDVLISLAIASDYFEGPRCRPTIKESNGPDDTP
TFHARNLGHPILRSDSLGKGSFVPNDVKIGGQGNASFIVLTGPNMGGKSTLLRQVCLTII
LAQIGADVPAESLELSLVDRIFVRMGARDHIMAGQSTFLVELMETASMLSSATKNSLVAL
DELGRGTSTSDGQAIAASVLEYLVHHVQCLGLFSTHYHRLAMEHKDTKVSLCHMACEVGV
GGGGMEEVTFLYRLAPGSCPKSYGVNVARLAGIPASVLRRANEKSSDFEAKYGKPFRMTQ
DKLVSAQSEDTLSAIRDLFRVVRAWPRHEDQAASLSMLREVQKRAKMQAVEG
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtcggcgtcgcgccgcctcagcaacggccgctcgccgctcgtgcggaagcag
agccagatcaccgccttcttctcctcctcctcctccccctccccttccccctccccggcc
gcaccgaaccccggcacgtccaagccctcgccgtcgccgctgaaccctgcgacgaagagg
aggcccccgctcgccgtgccctccccttgcgctcccaagccgccttcccttaatgaaggg
aagaagaagaaggagaaggataaaaagggggagcgtgccgcctcggctgtggctgcgcct
gcggcggaggtggtggggaggcggctgcgggtgttctggccgctggatgacgcgtggtac
gaggggagggtggaggcctacgacgggggctcccgcaggcaccgcgtgaagtacgacgac
ggcgacgaggaggaggtcgaccttgggaaggaaaagttcgagtgggccgccagtgaggag
tccacgctacctttgcagccggcgaggaagctgcggcgtctccggcggatgtctgatacc
gcagtggagaaatcgccggttgtggcagaggagggtgaggatgagactggggattccact
gaggacgaggactggaagaaggatgctgccacggaggatgattctgatgaggtggagctg
gatgatgaagaggatgaggaggttgtcgcggtgagatcgcgaaagggaaagttgaggaac
tccttgccaatttcaggttcagcgcggtcgacattgggttccggtttgacatcagcgtca
gggtcaacaatttcgaaaaagaggaaaaaggtggacgtgggcacattggactgtgctaaa
aagttcagctttgaaacagttaataccactggaaaagttgaatcagaagtgccaatgagc
tgtgaacggaggaagcaaactacagagaaggttcccactactcttactggagaggctgct
gagcgctttggacagcgggatgcagaaaagttcaaattccttggagaatggcgcaaagat
gcaaaaggcaggcgtcctgaaaaccctggatatgatccaagaacccttttcttgcctttc
cagttcttgaagaatttgacaggtggacagaggcaatggtgggagtttaaatcgcagcac
atggataaagttctgttcttcaagatgggaaaattctacgaattatttgagatggatgca
catgttggggcaaaggagcttgatcttcagtacatgaagggagaacaacctcactgtgga
ttcccggagaagaatttatcagtaaatctggagaaattagctaagaagggttatcgagtt
ctggttgtggagcagactgaaacaccagatcagcttgaacttcgacgtaaggagatgggt
ataaaagacaaggttgtgaggcgtgaaatatgtgcagtagtcacaaaaggaacactgaca
gaaggagagtccctgctgacgaaccccgatccgtcatatctcctatctgtgactgaaagt
tatcaacatagttcaaagaaaagtcaagacgcttgtactgttggtgtttgcatagttgat
gtttctacatgcaaatttattgtaggacagttccaagatgatcctgagcgccatgggtta
tgttcgatcttgtctgaaatgaggcctgtagaaatcatcaagccggctaatatgctgagt
ccagaaactgagaaggcattaaagaacaacacaagggagcctttaataaatgagttgctt
ccatccatggaattctgggatgcagaaaagactattcatgagataaagcagtactacagc
tcagcagaaaaaccaaacactgttgatgatgcacaaaacagtgtgggctgtctacctaac
ctattaagcgagctaattggagcaggtgataggacatatggactttctgctcttggaggt
tgtttattttatttaaggcaaacccttctggatgagaaaatactaccatgtgctgaattt
gagcaccttgcatgctcggggctcatcaacaatattcgaaagaatatgatacttgatgca
gcagcgctggaaaatctagagatgttagaaaatctcagaactggtggtctgtcagggacc
ctgtatgcacaattgaatcattgtgttactggatttggaaagaggctgcttaaacgctgg
attgcgagtccattgtatgatcgcagagcaatactacaacgtcaaagtgctatagctact
ttcaagggagctggccatgaatatgctgtcaagtttcgtaaggatttgtctaggctccct
gatatggagcgtctgcttgcacgccttttttctagctgtgatgaaagcaggagaagttca
gcagttgttctttatgaagatgcatcaaagagactgcttcaacagttcacatctgctctt
cgtggttgccagcagatgttccaagcatgttcttctattagcatgttgatatgcacagag
ggatctcaactaaatgatttgctctcactaggcacagggctactgaatgtatcatctatt
ttagattgcttcagagatgcatttgattggtcagaagcagaccgtaatggtcggatcata
cctcgtgaaggttgtgatcctgaatatgatgccactagccatgcaatagaggagattgaa
tccagtctaaaagaatacctgaaggagcaacagaagctgttgagacatgcatcggttaat
tatgttaatgttggaaaggatatttacctcattgaagtgcctgagagcctgggaggttct
gttcctggaaactatgagttgcagtctacaaaaaagggtttctaccggtactggacacca
gaagtgaaagaactaatatcagaactttcgaaggctgaggcagagaaagaatcaaaattg
aaaggcattcttcagaagctgattcagctatttgttgagcatcatagcgagtggagacaa
ttggtttctgttgttgctgagattgatgtcttgataagtcttgctattgcgagtgattat
ttcgagggaccaagatgccgtccaactatcaaagaatcaaatggcccagatgatactcct
actttccatgcaagaaatcttgggcatcccattctacgaagtgattccttaggcaagggt
tcttttgtaccaaatgatgttaagataggtgggcaagggaacgccagctttattgttctt
actggtccaaatatgggtggtaaatcaactcttttacgccaagtttgtcttactattata
ttggcacagattggagcagatgttcctgcagaaagccttgagctttctcttgttgaccgt
atatttgttcgcatgggagcaagggatcatattatggctggccaaagtacattcttggtg
gagctcatggagactgcttctatgctttcatcggctaccaagaattctcttgtggcttta
gatgagcttggacggggtacatcaacttctgatggacaagctatcgcggcatctgttcta
gaatatcttgttcatcatgtgcaatgtctaggcttgttttctacgcactaccataggtta
gcaatggaacataaggataccaaggtatcactttgtcatatggcatgcgaggtaggagtg
ggaggaggaggaatggaagaagtgactttcctttatagattagcacctggttcatgcccc
aaaagctatggtgtaaatgttgctcgattggcaggaatacctgcttcagtgcttcgaagg
gctaatgagaagtcaagtgactttgaggccaaatatgggaagccattccgtatgactcaa
gataagcttgtcagtgcacagagtgaggatacattatctgccattagggatttgttccgt
gttgtgagggcatggcctcgtcatgaagatcaggcagcaagcttaagtatgctccgtgaa
gtacagaagcgagccaagatgcaggctgtcgaaggttaa
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