Phragmites australis (common reed): 133901803
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Entry
133901803 CDS
T10575
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133901803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133901803
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133901803
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133901803
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133901803
NCBI-ProteinID:
XP_062199293
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Position
20:complement(9157584..9158785)
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AA seq
280 aa
AA seq
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MATPAAEKPDEVEIREVWADNLEAEFAVIRDIVDDYPYVAMDTEFPGVVCRPLGTYKSAA
EFNYATLKANVDMLKLIQLGLTFSDEHGGLPALGPEGRPCAWQFNFRGFDPRTDVAAADS
IDLLRRSGIDFARHAADGADARRFAELLMSSGVVMNADVHWVTFHSGYDFGYLLKLLTGT
NLPDTMSGFFDLIKIYFPVIYDIKHLMRFCNSLHGGLNKLAELLDVARVGICHQAGSDSL
LTALSFKKLKEAYFNGLTEKYAGVLYGLGFEGGETTSAAH
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcccgccgcagagaaacccgacgaagtggagatccgcgaggtgtgggcggac
aacctcgaggccgagttcgccgtgatccgcgacatcgtcgacgactacccctacgtcgcc
atggacacggagttccccggcgtggtttgccgcccgctagggacatacaagtccgccgcc
gagttcaactacgccacgctcaaggccaacgtcgacatgctcaagctcatccagctcggg
ctcaccttctccgacgagcacggaggcctcccggccctcggccccgagggacgcccctgc
gcctggcagttcaacttccgagggttcgaccccaggactgacgtcgccgccgcggactcc
atcgatctgctccgccgcagcgggatcgacttcgcccgccacgctgcggacggtgccgac
gcccgacgcttcgcggagctgctcatgtcctccggcgtcgtcatgaacgccgacgtccac
tgggtgaccttccacagcggctacgatttcggctacctgctcaagctgctcaccggtaca
aacctgcccgacacgatgtccggattcttcgacctcatcaagatatacttccccgtcata
tacgacatcaagcacttgatgagattctgcaatagcctccacggcgggctgaacaagctc
gctgagctgctcgacgtcgcgcgggttggaatctgccaccaggcgggctctgactcgctt
ctgactgcgctctccttcaagaagctcaaggaggcatacttcaatgggttaaccgagaaa
tatgctggtgtgttgtatgggctcggctttgagggtggggagaccacctctgctgctcac
tga
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