Phragmites australis (common reed): 133901893
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Entry
133901893 CDS
T10575
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133901893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133901893
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
133901893
Prokaryotic type
Archaeal type
TFB
133901893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
Zn_ribbon_3
WHD_GDS1
DUF7573
RB_B
Zn_ribbon_LysW
Motif
Other DBs
NCBI-GeneID:
133901893
NCBI-ProteinID:
XP_062199412
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All DBs
Position
20:complement(1781263..1784467)
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AA seq
312 aa
AA seq
DB search
MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG
GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG
LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL
DIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTY
AKEEDLKNLCTP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagtgactcgttctgcccggactgcaagaagcagacggaggtggcgttcgaccactcg
gcgggggacacggtgtgcaccgagtgcggcctcgtcctcgaggcgcactccgtcgacgag
acctccgagtggcgcaccttcgccaacgagtccaacgacaacgatcccgtccgtgtcggg
gggcccaccaacccgctcctcaccgacggggggctctccaccgtcatcgccaagcccaac
ggcgcgcagggcgagttcctctcctcgtccctcggcaggtggcagaaccgcggctccaac
cccgatcgatccctcatcctcgccttccgcaccatcgccaacatggctgacaggttgggt
cttgtggctactatcaaggaccgagccaatgaaatctataagaaggtggaagatctcaag
tctatcaggggaagaaatcaagatgccatattagctgcttgtctgtatattgcttgtaga
caagaagataggcctagaactgtaaaagaaatatgttcagttgctaatggagccacaaag
aaagaaattggccgagcaaaagaatttattgtgaagcaactggaagttgagatgggtcaa
tctatggagatgggaaccatacatgctggagatttcttgagacgtttctgttcaactctt
gggatgaacaatcaagctgttaaagcagcccaggaggcggttcagcgctcagaggagctt
gatatacggaggagccctatctcaattgcagccgctgtcatttatatgataactcaactc
tcagaggacaagaaaccacttaaagatatttctttggctactggtgtggcagaaggcacc
atcagaaattcttacaaggatctgtatccctatgcttcaaggctcattccaaacacatat
gccaaggaggaagacctgaagaatctctgcacgccttaa
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