Phragmites australis (common reed): 133902409
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Entry
133902409 CDS
T10575
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133902409
mRNA cycle factors
Common to processing body (P body) and stress granule
133902409
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Gene cluster
GFIT
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NCBI-GeneID:
133902409
NCBI-ProteinID:
XP_062199976
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Position
20:complement(22204779..22211474)
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AA seq
1049 aa
AA seq
DB search
MMTVPMDSATAAPSSRDLAERLFKKNGELENQLRKSVQSKVPSDPNIWIQMRDNFEKIIV
ADHDFSEQQEIEYHLWQLHYKRIEEFRRNIISAGSVAAHSGKSNANLDRIRRIKSAFRSF
LSEATGFYHDLMLKIKSNYGLPLGYFPEGLENAGNSVRDDKKTAEVKKGLVSCHRCLIYL
GDLARYKSLHGDDDSASREYATASSYYKEAASICPSSGNPHHQLAILASYSGNEVVSVYR
YFRSLAAETPFATARDNLIILFEKNRQSYAQLSANNKGPTARTLPPRSSGRGRGRGEARF
QPRDVSTEAAARERECSVPETLKAFYVRFVRLNGILFTRTSLETFGELFASVSNDLQILL
SSGPEEELNFGSDTVENSLAVVRLTAILIFTVHNVKKEPDSQSYVEIVQRRVLLQSAFTA
AFEFVGQILKRCSQLRDIASSFYLPAIMVYIEWLASHPELAVDSEMEEKHANARSFFWNQ
CILFMNKLILTDLASIDGDNDEACFSNMSTYEEGETGNRLALWEDLELRGFLPLLPAQII
LDFSSKQTFRNVGSTKEKKARVQRIFAAGKSLLNFVQIDQLRIYFDPSSKKFVMAEKPPV
FEANTPPHESLDALKMSASKLDQAARRFDSVSANLGVLQSKVQLCPEGDDDEEIVFKPIA
SEKFPKTPSELSVNGYAQPVQMSAAGWPTNGGSVSVQSTTSMSAASWPTNGMSVSIQSTG
PVSAAGNYNINQSLPMSSISWAVNGEQKVIPSIAPRYEFVQPVDVPASSWASNGTLHVGP
QNAISTFPDVVFDPRASAPMVPRFSSPDYSKLLREQELLLMSGLKNVNITGNGYLEQRLQ
GGLSGLQPMGYSPQISIESCGNITNLIHNQVKATGETIPSTLDSVVPSVAPSNGVTLRFT
EAPLVASKKNPVSRPSKPVGPPPGFNHITPKRQDDSISVEKLQNPQVDDYSWLDGYQPSL
DCVNNLKAVYPDVSATSTAFTTPFPFPGKQQQASGMHNHGANERTWQDFHLFEPAKQNMF
QNYQQRNQQTGQMAEQESANPIWSSRYLV
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttccgatggatagtgctactgcagccccgtcctcgcgggacctcgcggag
cgcctcttcaagaagaatggcgaactcgaaaatcagctccggaagtctgtgcagtccaaa
gttccatcagatcccaacatatggattcagatgcgtgacaactttgagaagataattgtg
gcagatcatgatttctctgaacagcaggagatagagtatcatctctggcagttgcactac
aaaagaattgaggagttcaggaggaacattatttctgcaggctcagttgcagctcatagc
gggaagagcaatgccaacctggatcgaatcaggagaattaaatcagccttcagaagcttc
ctttcagaagcaactggcttctatcacgacttgatgttaaagatcaaatcaaattatggc
cttccactgggttactttcccgagggccttgagaatgcaggcaactctgtgagagatgac
aagaaaacagctgaagtaaagaaaggcttggtgtcatgccaccgctgtctgatatatttg
ggagatcttgcccgttacaagagcttgcatggcgatgatgattctgctagtcgtgagtat
gccacggcctctagttactacaaggaggcagcttccatttgtccttccagtggcaatcct
catcatcagcttgcgatactagcatcttactcaggcaatgaggtggtgtctgtttatagg
tacttccgaagcttagctgctgaaactccttttgctacagcacgggataacttgattatt
ctttttgagaagaatcgtcagagttatgcacagctgtcagccaacaataaaggtcccaca
gctaggacattacccccgcggtcatctgggaggggccgaggacggggtgaagcaaggttt
cagccaagagatgttagtactgaagcagctgcacgggaacgagagtgcagtgttcctgaa
acattaaaggccttctatgtgcgatttgttaggctcaatggaattcttttcacaaggact
agtttggaaacatttggggagctgtttgcttcagtcagcaatgatctgcagattcttctt
tcatccggtcctgaggaggagctcaatttcggttctgacactgtagaaaattcattagct
gttgttagacttaccgccatccttatattcacagtgcacaatgtaaagaaagagcccgat
agccaatcgtatgttgaaattgtgcaacgcagggtactgcttcaaagtgcatttacagct
gcttttgagtttgttggacaaattctcaaaaggtgttcacagcttcgtgatattgcatca
agtttctacctgccagccattatggtctacattgaatggctggcgtcccatccagagttg
gctgttgattcagagatggaggaaaagcatgcgaatgcccgatctttcttctggaaccag
tgtatcttgttcatgaataagctgatccttacggaccttgcgtcgattgatggtgacaat
gatgaagcttgcttttctaatatgagcacgtatgaggagggtgaaactggcaacaggctt
gctttgtgggaagatcttgaattaagagggtttttgcccttacttcctgctcagatcatt
ttggatttctcaagcaaacagacgtttcgaaatgttggaagcaccaaggagaagaaagca
cgggttcaacggatttttgccgcagggaaatcactgctgaattttgttcagattgatcaa
ctgaggatatattttgatccatcttctaagaagtttgtcatggccgagaagcctcctgtt
tttgaagctaacacccctccacatgaatctttagatgcacttaaaatgagtgccagtaaa
cttgatcaagctgcaagaagatttgactcagtttctgctaatctgggcgtgcttcagtca
aaagtgcagttgtgtcctgaaggagatgacgatgaagaaattgttttcaagcctatagct
tccgagaagtttccgaaaactccttcagagctatctgttaatggatacgcccagcctgta
caaatgtctgctgctggttggccaaccaatggtgggtcagtttctgttcagagcactaca
tcaatgtctgctgctagttggccaactaatggtatgtcagtttctattcagagtaccgga
cctgtatcagctgctggcaattataacattaaccagtcactacctatgtcttctattagt
tgggctgtcaatggtgagcaaaaggtgattcctagcattgctccaagatatgaatttgtg
cagcctgttgacgtgcctgcttccagctgggcaagcaatggtacactgcatgttggtcct
cagaacgctatttcaactttcccagatgttgtctttgacccacgagcatctgcaccaatg
gttccacgcttcagtagccctgattattcaaaattgctcagggaacaagagttactttta
atgagtggactgaagaatgtcaacataactggaaatggttatctggagcagaggttgcag
ggtggattgagtggtttacagcccatggggtattcacctcagatatctattgaatcttgt
ggtaacattacaaatttgatacataatcaagtgaaagctactggagagactatcccatct
acgcttgattcagttgtaccatcagtagcaccttcaaatggtgtgacactcaggttcact
gaagcaccgcttgttgcatcaaagaagaaccctgttagtcgtccatcaaagcctgttggt
cctcctccaggatttaaccatattaccccaaagcgtcaggatgattctatttcagtcgag
aaactgcagaacccacaggttgatgattacagctggctggatggttatcagccgtcattg
gactgtgttaataacttaaaagctgtttatcctgatgtgagtgctactagcactgcattc
accactccattccctttccctggtaaacagcagcaggcctctgggatgcataaccatggg
gccaatgagaggacatggcaagatttccacctttttgagcctgcaaaacagaatatgttt
cagaattaccagcaaagaaatcagcaaactggtcaaatggctgaacaagagtcagcaaat
cctatctggtccagccgttaccttgtgtga
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