Phragmites australis (common reed): 133902432
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Entry
133902432 CDS
T10575
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133902432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133902432
Spliceosome [BR:
paua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
133902432
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
133902432
NCBI-ProteinID:
XP_062200002
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Position
20:complement(17645984..17650230)
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AA seq
834 aa
AA seq
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MDRHRSSRRARDDDGHHRSRDREDDRHRHHHKRDGGDDDDRRRHHRDKDDRRSHRHRDDD
DDRHRSRRSLSPSESPQPSAKRDRSSSRPRESVERRDSADREPPSSRKRKGHDGGGGGGD
EADREGGKRARASVDPPPPKEERPRRERRRFEDVDANGKDGDERGKGGKDASSYDQKNGQ
LRVNGDSQRGAGPNAGSQQPLNATPVVVVPSSVPVLSKVSSIITNNENEGVSIRSDEVTG
KSSTDGSATSAAGNSSSLSLDALAKAKKALQLKKELSEKLKKLPMLNNKLGTSITDTQVS
KKEETKTSVSAVEAQPVSKGEATTNLPTSSVSGTQATAGAIGIPGLANISNLDAVKRAQE
LAAKMGFRQDPQFAPLINLFPGSSTELTVPQRPAKAPVLRLDAQGREIDEHGNVISMTKP
MNLSTLKVNINKQKKEAFQIIKPDLDSLAKSSAHFDERMGINQNKLLRPKRPGFQFIEEG
KLSRQAELQRIKSQFGEAQAKELKVKQAQLAKAKAEVDMNPNLIEVAPGVRAPKQKQKEE
IPDIEPWDARILLSVTYEDISVEKLNMDRITIYVEHPEPYDPPAEPAPPPPQPLKLTKKE
QKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKMSNLMKVLGSEAVQDPTRLEMEIRTAA
AEREQAHVDRNIARKLTPSERREKKERKLFDDPNSTVETIVCVYKIRDLSHPQTRFKVDV
NAQENRLTGAAVITDGISVVVVEGGKKSIKRYSKLMLNRIDWAAAVGGEDDADEEPDKLV
NSCVLVWQGSVAKSTFHRFTVHNCRSEAAAKKVFIDASVPHYWDMAVNFSEDSS
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggaccgccaccgctcctcccgccgcgcccgcgacgacgacggccaccaccgctcccgc
gaccgggaggacgaccgccaccgccaccaccacaagcgcgacggcggggatgacgacgac
cgccgccgccaccaccgcgacaaagacgaccgccgcagccaccgccaccgcgacgacgac
gacgaccgccaccgcagccggcggtccttgtcgccgtcggagtccccgcagccctcggcg
aagcgggaccgctcgtcgagccgcccgcgggagtccgttgagcgccgggactctgccgac
cgcgagccaccgtcgtcgcggaagcggaagggccacgatggcggcggcggcgggggtgac
gaggccgaccgcgaagggggcaagcgggccagggcttccgtggacccgcctccgcccaag
gaggagagacccaggcgggagcgccggaggtttgaggatgttgatgcgaatggaaaggat
ggtgatgagaggggcaaggggggtaaggatgcctcatcctatgaccagaagaatgggcag
ttaagagttaatggtgattcacagaggggtgctgggcctaatgctggctctcagcaaccg
ctcaatgccacacctgttgttgtggtgccatcttctgttcctgttctttcaaaggtatct
tcgattattaccaacaatgaaaatgagggagttagtattagatctgatgaggttactgga
aaatctagtacagatggaagtgcaacctcagctgctggcaacagtagtagcctatctctt
gatgctttagccaaagcaaaaaaagctttgcaactgaagaaggaactttcagaaaaactc
aagaaattacccatgcttaataataaacttggtactagtattactgatacacaagtttct
aagaaagaagaaacaaaaacttctgtatcagctgtagaagctcagcccgtttctaaagga
gaagcaacaactaatctgcccactagtagtgtctctgggacgcaggccacagctggtgcg
attggtattccaggtctggctaacatttccaatctggatgctgtgaagagagctcaagag
cttgctgctaagatgggattccgccaagatccacaatttgctcccctcattaacttattt
cctggctcatctactgagctaacagtgcctcaaagacctgccaaggctcctgttcttcgc
cttgacgctcaaggtagagaaattgatgagcatggaaatgttatcagcatgacaaagcca
atgaacctgagtactctgaaggtcaacataaacaagcaaaagaaggaagcttttcaaata
attaaaccggacttggattctcttgcaaaatcaagtgctcattttgatgaaaggatgggc
ataaaccaaaacaagctcctccgccctaaaaggccaggatttcagttcattgaggaaggt
aaactctctaggcaggctgaattgcagagaattaagagtcaatttggcgaagcacaagct
aaagagctcaaagtaaagcaagcccagcttgctaaagcaaaggcagaagtagacatgaac
ccaaaccttattgaagttgctcctggtgtgagggctccaaagcaaaagcagaaggaagaa
attcctgacattgagccatgggatgccagaattttactttctgtcacatatgaggatatc
tctgtggagaagcttaatatggacaggatcaccatatatgtagaacatccagagccatac
gatccaccagctgaacctgcaccaccgccgccccagccactgaagttaactaagaaggag
cagaagaagctcagaacacagaggcgccttgctaaggaaaaagataggcaagaaatgatt
aggcaaggcctcttggagccacccaaacctaaggtcaaaatgagcaatcttatgaaagta
ctaggctctgaagctgtgcaagatcccacgcgcctggagatggaaataagaactgctgct
gcggagcgtgagcaggctcatgttgaccgcaacattgcccgcaagctcacaccatctgag
cgccgtgagaagaaagagcggaagctttttgatgatcctaacagcacggtggagacaata
gtctgtgtttacaaaatcagagacctgtcccacccacagacacgctttaaggtcgatgtg
aatgcacaagagaaccggctaactggtgcagcagtgattacggatggtatcagtgtcgtg
gttgttgaaggagggaagaagtcgatcaaaaggtacagtaagctcatgctgaaccggata
gactgggcagctgcagttggtggtgaggacgatgctgatgaggaacctgacaagctggtg
aatagctgtgtattggtctggcagggtagcgttgcaaagtccaccttccacaggttcact
gtacacaactgccggagtgaggctgctgctaagaaggttttcatagatgcttctgttcct
cattactgggatatggctgtcaatttttcagaagattcgtcgtga
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