Phragmites australis (common reed): 133903286
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Entry
133903286 CDS
T10575
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133903286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133903286
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
133903286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_14
TPR_11
TPR_8
TPR_17
TPR_CcmH_CycH
TPR_12
TPR_19
TPR_7
TPR_9
ARM_TT21_C
BTAD
TPR_15
Motif
Other DBs
NCBI-GeneID:
133903286
NCBI-ProteinID:
XP_062200573
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All DBs
Position
21:complement(2090235..2098229)
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AA seq
1196 aa
AA seq
DB search
MLETAAEANLRRELEETLAADPSSPLHHYNLGVFLWGRAEAEAKQEGDGEEARRLRAAAA
ENFLAAAKLNPNDGVPFRFLGHHYARGGDTQRGAKCYQRAVALNPDDAEAGEALCDLLDV
EGKESLEVAVCKEAAGKSPRAFWAFQRLGYLQVHQRKWSEAIQSLQHAIRGYPTCADLWE
ALGLAYHRLGMFTAAVKSYGRAIELDSSRVFALIESGNIQLMLGYFRKGVEQFRSALEMA
PRNHSAYSGLASALLAWARHCVTTGAFGWAASLLKEASEAAKVCTSLSGHLSCVWKLHGD
VQLALARCFPWVDGKIKRGVDEQIFKDSILEWRNTCLTAANGAKLSYQRALHLAPWEANV
RNDTAICLDLIYSLDDNNRLNPNVWELPEKMSLGALILEPVNKDYWVTLGSMSSNLVLKQ
HSFIRALHLDMSLSEAWAYLGKIYRQSGDQQLARQAFDRARSIDPSLALPWAGMSAENYH
QSGGSPVNESFESCLRAVQIQPLPEFQVGLGTIAARSGNLLSPQVLMAVRQTVQRAPHYP
ESHNLNGLVSEVRSDFQSAITFYQHARFALGMMHTSKSDNRYAFTNVSVNLARSLCKAGL
ATDAVRECEELRSQGLLNADGLQIYAFALWRIGRSEEALSVSRKLAENLSGMKPESATAA
LGFICTLTYQISGKDSAAAVIHKLPGQLSYGTQLKFIISALDALQPNKRFQLPQLSMPPR
LTSYEVMSEVHSNIALGKAIVGELDKPLRVDGSLSYLKKVLHMYPDCSLVRNQLGSLLLW
SGDWMASHEAVRVTSLSHGHASSMGLKSPHQIQACAIVSCYTTCTPYPKFSFPTCEHHYL
SGYDAIHHLQRWVHREPWNQDARYLLVLAIFQKARDEKYPSHICIILKRLILQVLSSISN
SQQNKVVQYEMFLLLLSSSEVSLQSFDYDNCIAQAKEALKITPSSHVDTFFAHLQLCRAY
AVQGDLLNFRNEYMKCLRNHTDTEIGWVMLKHLESVCSLEGSSDEIDKNLRECIKSNGSD
PSKWASLFNLACAQGFIWDENFASAEKALAQACAEGDPDSCILFLNGATCMEIARRFAAP
QFISRAASSLRKAQHKSLASLPIVSLLLAQAEGSLGSKTKWEKNLRLEWFSWPPELRPAE
VYFQMHLLARQSAAAASQQNQLVETMQSPERWLLRAVHLNPSCSRYWKALLQLMDA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaaccgcggcggaggccaacctccgcagggaactggaggaaaccctcgccgcc
gacccttccagcccgctccaccactacaacctcggagtcttcctatggggccgcgcggag
gcggaagcgaagcaagagggggacggggaggaggcgagacggctccgcgctgcggcggct
gagaacttcctcgcggcggccaagctcaaccccaacgatggcgttcccttccgcttcctc
ggccaccactacgcgcgcggcggcgacacgcagcgaggggccaagtgctaccagcgcgcg
gtggcgctcaaccctgacgatgccgaggctggggaggcgctctgtgacttgctagatgtt
gaggggaaggagagcttggaggttgctgtgtgcaaggaggcagctggcaagtcacctcgc
gcattctgggcctttcagaggcttggctacttgcaggttcatcaaaggaaatggtcagag
gccatacaaagccttcagcatgcaatacgaggttacccaacatgcgcagatttatgggag
gcacttggtctggcataccaccgtttgggcatgttcactgcagcagtaaagtcatatggg
cgcgctattgaactggatagttccagggtctttgcattgatagaaagtggaaacatccag
ctaatgcttggttatttcagaaagggagttgaacagtttcgttctgctttggaaatggct
ccacgtaaccattctgcatactctgggcttgcttctgcattacttgcatgggcaagacat
tgtgtaactactggggcctttggctgggcagctagcctattgaaggaagcatcagaagct
gccaaagtttgtacttcgttgagtggacacctttcatgtgtttggaaattgcatggggat
gtccagctcgcacttgcgagatgctttccatgggttgatgggaagatcaagaggggtgtg
gatgagcagattttcaaagattctattcttgagtggagaaatacatgtttgacagctgca
aatggtgcaaaactctcatatcaacgggctctgcatcttgcaccctgggaagctaatgtt
cgcaatgatactgctatttgtcttgatctaatttattccttggatgacaataacagactc
aaccccaacgtttgggagctgccagagaaaatgtcactaggtgccttgatactggaacca
gttaataaggattactgggttacattgggttcaatgtcaagtaatctggttttgaagcag
cattcttttattagggcactgcatctcgatatgtctctgtctgaagcttgggcatacctt
ggaaagatttacagacagtcaggtgatcaacaactggcaagacaagcatttgatcgagct
cgaagcattgatccttcattggccttgccatgggctggaatgtcggctgaaaactatcac
cagtctgggggcagtcctgtaaatgagtcctttgaaagctgcttgagggctgtgcagatc
cagcctctgccagagttccaggttggtcttggaacaattgctgctcgttctggtaatctt
ctttcacctcaggtattgatggcagtacggcagactgttcaacgagcacctcattaccca
gagtctcacaatttaaatggcttggtttctgaagtgcggtcagattttcagtctgcaatc
acattttaccaacatgcgagatttgctttaggcatgatgcacacttccaagtcagacaat
agatatgcttttaccaatgtttcagtgaaccttgcccggtcactatgcaaggctggtctt
gcaactgatgcagtgcgggaatgtgaagagttgagaagtcaaggattgttgaacgctgat
ggactgcagatatatgcttttgcattgtggagaattggacgaagtgaggaagctctttct
gtatctagaaaattggctgaaaatttatctggcatgaagccggagagtgcaactgcggct
ttgggattcatatgcacattgacatatcaaatttccgggaaggactctgcagctgcagtc
attcacaagcttcctggtcaactcagttatggcacacaattgaaattcattatctctgca
ttggatgctttgcagccaaacaagcgttttcagttgccgcaattgagtatgcctcctaga
cttacatcctatgaagtaatgagtgaagtccactcaaatattgctcttgggaaggctatt
gtcggggaattggacaagcccttgagggttgatggtagtttgtcttacctgaaaaaggtt
ctgcacatgtatcccgactgcagtttagtgagaaaccagcttggatctcttctgctgtgg
agcggagattggatggcttctcatgaagcagtaagggttacttctctgtcacatggacac
gcatccagtatgggcctaaaatctccacatcaaattcaagcatgcgcaatagtttcttgc
tatactacctgcaccccttatcctaagttctctttcccaacatgtgaacaccattaccta
agtggatatgatgcaatacaccacctgcaaaggtgggttcaccgcgaaccatggaaccaa
gatgcacgctacctgcttgtacttgccattttccaaaaagcacgtgatgaaaagtaccct
agccatatctgtatcattctgaagaggctcattttgcaagtgctgtccagcattagcaat
tcacaacagaacaaagttgtgcagtacgagatgttcttgctacttctttcgtcttcagaa
gttagtttgcaatcttttgactatgataattgcattgctcaagctaaagaagctctaaag
atcactccctcaagccatgtggatactttctttgcacacttgcaactgtgtcgggcctat
gcggtgcaaggggatcttttgaacttcaggaatgagtacatgaaatgcttgcgaaaccat
acggatactgaaattggctgggtaatgctgaagcacctcgaatctgtatgttcattggag
ggctcttctgatgaaatagataaaaatcttcgagaatgtattaaaagtaatggtagtgac
ccatcgaaatgggcatctcttttcaatctagcctgtgctcagggctttatatgggatgaa
aactttgcgagtgctgaaaaagctcttgctcaggcatgcgccgaaggagatccagacagc
tgcatcttattcctcaatggtgcgacctgtatggaaattgcccggaggtttgcagctcct
caatttatatcccgcgcagcttccagcctcagaaaggcccagcacaaatcacttgcttca
ttacctattgtgtcattgctactggctcaagcagagggcagccttggctccaaaaccaag
tgggagaaaaaccttcgactagaatggttctcatggcccccagaactgaggcctgcagag
gtgtacttccaaatgcacctgctggcaaggcagtcagctgcagcggcttctcagcagaac
cagctggtggagacgatgcagagcccggagagatggctgcttagggcagtgcacctgaac
ccgtcgtgctccaggtactggaaggctttgctgcagcttatggacgcgtaa
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integrated database retrieval system
