Phragmites australis (common reed): 133903288
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Entry
133903288 CDS
T10575
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133903288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133903288
Enzymes [BR:
paua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133903288
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133903288
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133903288
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
133903288
NCBI-ProteinID:
XP_062200576
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Position
21:10729113..10741398
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AA seq
606 aa
AA seq
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MLSVVRVHLPSEIPIVGCEITPYVLLRRPDGAVSTDDVPETAPSDGQFMRYRWYRIQSDR
KVPICSVHPMEQAVIQCLGCLKSKIPVAKSYHCSAKCFSDAWQHHKVLHERASTALNENG
TEEEELFGRFGSGGSGVLNTAGSGSMSNFGQSPGVNNGPVPSYPSGTDKNSGETWFEVGR
LRTYTPTADDIGHALKFECVAVDAEKKAPVGPPTSIMTSRVIPAPTPTPRRLIQVNGDVL
GHLDLDSQTSFLGTFTMLSYNILADAYATSDAYSYCPTWALSWTYRRQNLLREIIGYHPD
IICLQEVQLNHFEDFFAPELDKHGYQALYKKRTMEVYSGNPRAIDGCATFFRRDKFSHVK
KYEVEFNKAAQSLTDVIIPAAQKRVALSRLIKDNIALIAVLEAKFGNHGTENPGKRQLLC
VANTHINVHQDLKDVKLWEVHTLLKGLEKIAVSADIPMLVCGDFNSTPGSSPHGLLAVGK
VDQLHPDLAIDPLGILRPLSKLNHQLPLVSAYSSFARMVGVGYDLDHQRRRMDPATNEPL
FTNCTRDFTGTVDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRC
KPRIRR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtggtccgagtgcacctgccgtcggagatcccgattgtgggctgcgagatc
acgccgtatgtgctgctgcggcggcccgacggtgcagtctccaccgacgacgtgcccgag
accgccccctccgatggccagttcatgcggtacagatggtatcgcatacaaagcgatcgg
aaagtccctatatgcagtgtacatccaatggagcaagcagtaattcagtgcctaggttgt
ctcaagtcaaaaatacctgttgctaagagctaccattgttcagctaaatgcttctctgat
gcatggcagcaccacaaagttttgcatgagcgagctagtactgcattaaatgaaaatgga
actgaagaagaggagttatttggtagatttggcagtggtggttctggggttctaaatact
gctgggtctggttcaatgtcaaattttggacagagccctggtgttaataatgggcctgtg
ccttcgtatccgtcgggcactgataagaactctggtgaaacttggtttgaagtggggcgc
ttgcgcacatatacacccactgctgatgatattgggcatgcactaaaatttgagtgtgta
gctgtggatgcagaaaaaaaagctccagtgggacctccaacttcaattatgacatcacgt
gtaatcccagcaccaactcctactccacgtcgccttatccaagtgaatggagatgtttta
ggtcacttggatttggacagccagacttcgttcttggggacattcactatgctgtcctac
aatattcttgctgatgcatatgctacaagtgatgcatatagctactgcccaacatgggca
ctttcgtggacttacagaagacaaaatttgttgcgtgaaattattggttatcaccccgat
atcatctgtcttcaggaggtacaattgaatcacttcgaagatttttttgcacctgagctt
gacaaacatggatatcaggcgctttacaagaaaaggacaatggaggtgtattccggaaat
cctcgggccattgatggctgtgctacttttttccgtagagacaaattttcacatgttaaa
aaatatgaggttgagttcaataaggctgcacagtctttaacagatgtgattattcctgct
gctcagaaaagagtggctttaagtcgattgatcaaggataacattgcattaattgcggtt
ttagaagctaaatttggtaaccatggaaccgaaaatcctggtaaaagacagctcctttgt
gtggcaaatacacatataaacgtccaccaggacctaaaagatgtgaagctatgggaggtt
cataccctcctaaaaggattggaaaagatagctgttagcgcagacattcctatgttggtc
tgtggagattttaattcaacccctgggagttctccacatgggcttcttgcagtgggcaaa
gttgatcagctgcatccagatctggccatagacccccttggaattttgcgccctctaagc
aagttgaatcaccagcttcctctggtcagtgcatattcttcatttgcaagaatggtaggt
gttggctatgatttggaccaccagaggagaaggatggacccagcaacaaatgaaccactt
ttcacaaattgtacaagagattttactggaactgttgattacatattttacacagcggat
tcattgacagtggagtcattattggaacttctggatgaagaaagcttaagaaaagacaca
gctcttccttcacctgaatggtcatcagatcacatagcgctcttagctgagttccggtgc
aagcctagaatcagacggtga
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