Phragmites australis (common reed): 133903299
Help
Entry
133903299 CDS
T10575
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133903299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133903299
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
133903299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
133903299
NCBI-ProteinID:
XP_062200590
LinkDB
All DBs
Position
21:complement(8851067..8857522)
Genome browser
AA seq
901 aa
AA seq
DB search
MEADEASQPPPWAQNKSAAAIEVSSGPLAAAAARLSARSRALPSSRDFHFYNNFPAFKSP
VGAAAAKADASLGVLGAAPLLPRQQPPFPGAGDLDNAHDWLVALNDDLLERFGASMDEFR
SLREKEEVAGRRAAPEETVGAGDGFQVVYGKKKKKVGGREEGVGKVEAFGVSGSVKMATK
DKATVPAKVPFHIPTIPRPQDAYRIVVDNTNKPFEHVLLELSEDGTRPVHPLEKLPMEQL
IDRNVPHSEPVKPPALDDTPFTFVEDLKTLDVLATKLKNATEFSVDLEHNHYRSFQGLTC
LMQISTRTEDFIVDTLKLHKYLGDYLREPFRDPTKRKVLHGAGRDILWLQRDFGIYICNL
FDTGQASRILQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDTHYLLY
IYDLIRLRLVKESSGENDLLLEVYKRSNEICLQLYEKDLLTDSSYLYIHGLKENELNARQ
LAVLSSLYQWRDSIARAEDESTGYILPNKILLEIAKQMPVTAGKLKRIVKSRNPFLERHL
GHVITTIRSAMENSDAFESIAEQLKKGKLDDLVVVNTMKSSEDTEMITAVDADNNEDPSD
ESAVVSTGITNASAAAHCMGTVTSEASLGDTQLENITHETKNSGTLSGLTASVDKEIFSN
GGQQQVAKATVQVSKRPTAFGALLGKPASGRRPNLFPGFSTEQGKSKVDKIMSSVVLPFH
HFSGGAKPPSAGLPLKESVHSEPESIQHSDPACQLEEVIQLDTETDDPQLQENHNKDGHC
EPEDTEMSEPPSDVPSGIQHQFRSLNEERNLKQNHKTPQEPEFNEQLKAFDYAEARKSIS
FGEPKAERRKDGAVARAINMDSGDKRRASNKPGVIENEGNFQNPRRRQAFPPSGNRSSTY
H
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggacgaggcttcgcagccgcctccgtgggcgcagaataagtcggccgcggcc
atcgaggtctcgtcgggtccgcttgccgccgccgcggcccgcctctccgcccgctcccgc
gcgctcccgtcgtcccgcgacttccacttctacaacaacttccccgccttcaaatccccc
gtcggcgccgccgcggccaaggccgacgcctccctcggcgtgctaggcgccgcgccgcta
ctcccgaggcagcagccgccgttccccggggccggcgaccttgacaacgcgcacgactgg
cttgtcgctctcaacgacgacctgcttgagcggttcggcgcctccatggacgagttcagg
tcgctgagggagaaggaggaggtggctgggcggagggccgccccggaggagacggtgggg
gcgggggacgggttccaggtggtgtacgggaagaagaagaagaaggtgggtggtcgggag
gaaggcgttggaaaggtcgaggcctttggggtttctggctcggtgaagatggccacaaag
gacaaggcgaccgtgccggcgaaggtgcccttccacatccccaccattccgcggccccag
gacgcgtaccgcattgtggtggacaacacgaacaagccgttcgagcatgtcttgcttgag
ctgagcgaggacggcacccgtcccgtgcacccattggagaaactccctatggaacaacta
attgacagaaatgttcctcatagtgagccagtaaagccacctgctttagatgatacccct
tttacatttgttgaagacctgaaaaccttggatgtgctagccacgaagctaaagaatgca
accgagttttctgtcgatttggaacacaaccattataggtcatttcagggtctgacatgc
ttgatgcagatttcaacaagaacagaggactttattgtagatactcttaagcttcacaaa
tatctcggtgattacttaagagaacctttcagagatccaaccaagagaaaggtactgcat
ggcgcaggtcgtgacatattatggcttcaacgtgacttcggtatatacatatgcaacctt
ttcgacacaggccaggcttcaagaatcttacagatggaccgcaacagcttggagcatctt
ttgcaccatttctgtggagtgacagcaaataaagaatatcaggcagcagattggaggttg
aggccacttcctgatgaaatgattaagtatgctagagaagatacacactatctgctgtat
atatatgacctgattagattaagactggtgaaggagtcgtcaggtgaaaacgatcttctt
ttagaggtttacaaacgcagcaatgaaatctgtttgcaactatatgagaaggatctgctg
actgattcatcatatctttacatacacgggttgaaagaaaatgaattgaatgcaagacag
ctggcagttctttctagtctatatcaatggagagatagcattgctcgtgctgaggatgag
agcactggctatatattacccaataagattctacttgagatagcaaagcagatgcctgtg
acagctggaaagttaaaaagaattgtgaaatcgagaaatccatttcttgagcgccatctc
ggccatgtcattactaccataaggagtgccatggaaaattctgatgcttttgaaagtata
gctgagcaactaaagaagggaaagcttgatgatttagtggtggtaaatacaatgaagagc
agtgaagacactgagatgattacagctgtcgatgctgataacaatgaagatccgagtgat
gaatctgctgtagtttccacagggatcacaaatgctagtgctgctgctcactgtatgggt
actgttacaagcgaagcttctttaggtgatacccagctagagaacatcacgcatgaaact
aaaaactcagggaccttatcagggttgactgcatcggtggataaggaaatatttagcaat
ggtggccagcaacaagtagcaaaggccactgttcaagtatcgaagaggcctacagctttt
ggagctctgttgggaaaaccagcttctggaagaaggccaaatctttttccagggttttca
actgagcagggtaagagtaaggtagacaagataatgtcttccgtggtacttccttttcat
catttctctggtggtgcaaaacctccatcagccggccttccattgaaagaatcggtgcat
tctgaaccagaaagcatccaacacagtgatccagcttgtcagttggaagaagtgattcag
ttggacactgaaacagatgatccccagcttcaagaaaatcacaacaaagatgggcattgt
gagcctgaagacacggagatgtccgagcccccttcagatgttccctctggtattcagcat
caatttcggtcactcaacgaagaaagaaacctaaagcagaaccacaagacacctcaagaa
cctgaatttaatgagcagttgaaggcttttgattacgctgaagctagaaagagtatttca
tttggcgagcctaaagctgagaggagaaaagatggtgcagttgccagggcaataaacatg
gattctggggacaaacggagagcatcaaacaaacccggcgtcatagagaatgagggaaat
ttccagaatccacgaaggcggcaagctttcccaccttctggcaatagaagttcgacatac
cactag
DBGET
integrated database retrieval system
