Phragmites australis (common reed): 133903463
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Entry
133903463 CDS
T10575
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133903463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133903463
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
133903463
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
ELL
DZR_2
NTPase_P4
zf-RING_5
zf-RING_2
DUF1258
zf-P11
Motif
Other DBs
NCBI-GeneID:
133903463
NCBI-ProteinID:
XP_062200833
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Position
21:18528799..18536591
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AA seq
531 aa
AA seq
DB search
MGSADLVLKPACESCGSTSELYGTGCKHTTVCKNCGKSMARSRARCLVCSTPITRLIREY
NVRANAITDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNKKPWI
LEDETGQYQYQGQMEGSQSATATYYLLMMQGKEFNAHPAGSWYNFSKIAQYKQLTLEEAE
EKMNKRKTNATGYERWMMKAAANGPAAFGSDVMKLEAANGGEKESARPKKGKNNEEGNNS
DKGEEDEEEEAARKNKLGLTKKGMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRTAGLNESDADEDE
EEDDQEDESSPVLAPKQKDQLKDEPVDNSPAKPTPSGHARSTPPASKSKQKRKSGADDAK
TSGSAFSKKAKVESDTKASVVKEEAPSLTKPTSKASASSKSGSNVSPVTEDEIRSVLLAV
APVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLREDKK
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgcggacctggttctaaagccggcgtgtgagagctgcggctccacgtcggag
ctctacggcacggggtgcaagcacaccacggtctgcaagaactgtggcaagtccatggcg
cgctcccgcgcccgatgcctcgtctgctccacccccatcaccaggctcatccgggaatac
aatgtacgagctaatgctatcacagataagacctactctattggaagatttgtcactggt
ttacctcctttctcgaagaagaagagtgcggagaacaaatggtctcttcataaggagggc
ctacaaggacggcagattcctgagaatatgcgggaaaaatacaacaagaaaccatggatt
ttggaagatgaaacaggccaatatcagtatcaaggtcaaatggagggatcacagtcagct
acagctacatattatctgttaatgatgcagggcaaggaatttaatgcacatcctgctggt
tcctggtataatttcagtaagattgcacagtataaacaactgacattggaagaggctgaa
gaaaagatgaataagaggaagaccaatgccactggttatgaacgttggatgatgaaagca
gctgcaaatgggccagctgcctttggttcagacgtgatgaaacttgaggctgcaaatggt
ggggaaaaagaaagtgctcgtcccaagaaaggaaaaaataatgaggaaggtaataattct
gataagggtgaggaggatgaagaagaggaagctgcacgcaaaaataagcttggactcaca
aaaaagggcatggatgatgatgaggaaggtggaaaagatctggactttgatttggatgat
gaaattgagaaaggtgatgactgggagcatgaagaaacattcactgacgatgatgaggct
gtggatatcgacccagaggaacgggcagatttagctcctgaaattcctgccccacctgaa
attaagcaggatgatgaagagaatgaagaagaaggtggtctgagcaagtctggcaaggaa
ttaaagaagctgcttgggcgcactgctggactaaatgagtcagatgctgatgaggatgaa
gaagaagatgatcaggaagatgagtcatctccagtgcttgctccaaaacagaaggatcaa
cttaaagatgaacctgtagataacagcccggctaaaccaacaccatcaggacatgctcgc
agcacacctcctgcatccaaatccaagcaaaagagaaaatcaggtgctgatgatgcaaaa
acttctggcagtgcattttcaaagaaagcaaaggtagaatcggatacgaaagcatcagtt
gtgaaagaagaggcaccatctttgacaaaacctacatcaaaggcctccgcttcatcaaaa
agtgggtcaaacgtgtcacctgtcacagaggatgaaatcaggagtgttcttcttgcggtg
gcgccagtcaccacacaagatttggtatccagatttaagtctagacttcgaggtccagag
gacaagaatgcttttgctgaaattttgaagaaaatttccaagatacagaagactaatggc
cacaattatgtcgtccttagagaggacaagaagtga
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