KEGG   Phragmites australis (common reed): 133903470
Entry
133903470         CDS       T10575                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03030  DNA replication
paua03410  Base excision repair
paua03420  Nucleotide excision repair
paua03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    133903470
   03410 Base excision repair
    133903470
   03420 Nucleotide excision repair
    133903470
   03430 Mismatch repair
    133903470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:paua03032]
    133903470
   03400 DNA repair and recombination proteins [BR:paua03400]
    133903470
Enzymes [BR:paua01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     133903470
    6.5.1.6  DNA ligase (ATP or NAD+)
     133903470
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     133903470
DNA replication proteins [BR:paua03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    133903470
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     133903470
DNA repair and recombination proteins [BR:paua03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     133903470
   NER (nucleotide excision repair)
    Other NER factors
     133903470
   MMR (mismatch excision repair)
    Other MMR factors
     133903470
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114 TrmB eIF-3c_N
Other DBs
NCBI-GeneID: 133903470
NCBI-ProteinID: XP_062200845
LinkDB
Position
21:5256534..5264840
AA seq 904 aa
MFVLGATPTSSLLRCHPLPSPKTLALVRLPPLLPYRPRLSSSSSASPSSPRCRATATAAA
KSGEKKPPTARAKRTGAVPAPAAAAVGMSASGGNGGKRSVADVLMGNARAAASKAKKAAP
SPKNPRAQPAAQADGSGIEPEAAAVAEKPPSPVRSKRASSPAKSPKSPADGAARLKKRSK
GLATAAQLEAKEKSPSPKRSETLAAKSDAKPSDEGVVSESNEKKKRSPSPTKAKGQASQP
EEKKRPSSPKKAKTLDAPMCEGKNTTLELKKKGSEFDPMAAAYWKPGEPVPFLFLARALD
LISNESGRIIITEILSNVFRTVIATTPDDLLATVYLSANRIAPPHEGIELGIGDASIIRA
LAEAYGRKEEHVKKNLKELGDLGLVAKASRSSQKMMYKPKPLTIARVLNTFRTIAKESGK
DSQDKKRNHIKGLLVAATDCEPQYITRLLQSKMRIGLAEKTVQMALGQAAVYSEKKASPP
KVQSPFEEAATIIKQVYSVLPIYDKIVPALLEVGVWKLPETCKFSIGVPVGPMLAKATKS
VSEIIDKFQGLEYTCEYKYDGERAQIHCMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRK
PTIKSFVLDCEIVAYDYEKQKILPFQILSTRARKGVTINDIKVSVCTFGFDILYLNGKPL
LQEQLKVRREHLYNSFEEVPGVFQFATAITSNDLEEIQKFLDKAVNSSCEGLIIKTMDKD
ATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFFGRGKRTGVYGSFLLACYDEQNEEY
QTICNIGTGFSEQQLEERSVSLRSKVIEKPKPYYRFADTMDPDVWFEPSEVWEVKAADLS
ISPVHRAANGIVDPNKGISLRFPRLLRVRDDKSPEEATTSEQVADMYRAQKINHAYNQED
EDDD
NT seq 2715 nt   +upstreamnt  +downstreamnt
atgttcgtcctcggagccacccccacctcctcgctcctccgatgccacccgctcccctcg
cctaaaaccctagccctcgtccggcttccgcctctcctcccctaccgcccccgcctatcc
tcttcctcctcggcttccccctcctccccccgctgccgcgcgaccgcgaccgccgccgcg
aaatccggcgagaagaagccgccgaccgcgagggcgaagcggaccggcgcggtacctgca
ccagcagcggctgcggtgggaatgtcggcctccggtggcaatggagggaagcgcagcgtg
gcggacgtgctgatggggaacgcgcgggccgccgccagtaaggcgaagaaggcggcgccg
tcaccgaagaatccccgggcgcagcccgcagctcaggccgacggctcggggatcgaaccc
gaggctgcggcggtggcggagaagccgccttcaccggtgaggtccaagcgggcgtcctcg
ccggcgaagtcccccaaatcgccggctgacggggcagctaggttgaagaagaggtccaaa
ggtctagccaccgcggcgcaattggaggcgaaggagaagtccccgtcgccgaagagatcc
gaaaccctagccgccaaatccgacgccaagccttccgacgaaggcgttgtgtctgaatct
aatgagaagaagaagaggtcgccgtcgccgacgaaggctaaaggccaagcttcccaacct
gaggagaagaagcggccttcctcaccgaagaaggccaaaaccttggatgccccgatgtgc
gaggggaagaatactaccctagagctgaagaagaaaggcagtgagtttgatccgatggct
gctgcctattggaagcctggtgaacccgtgccattcctgttcctggctcgggcacttgat
ctcatctccaatgagagtggccggattatcattacagagatcttatcaaatgtgttccgg
actgtgattgccacaacgccagatgatctccttgcgacggtatacctctcagccaaccgg
attgcgccgcctcatgaggggattgagcttggaatcggggatgcatcaatcatccgtgca
cttgcagaggcatatggacgcaaagaggagcatgtcaagaagaacctcaaggaactgggt
gatttggggcttgtggcgaaagcaagcaggtcgtcacagaagatgatgtacaagccaaaa
ccactgaccatagctcgggtgcttaacacttttcggacaattgcaaaggaatcaggcaaa
gacagtcaagataaaaaaagaaatcacatcaagggacttcttgttgctgcaactgactgt
gaacctcaatatattacacgtcttcttcagtcgaagatgaggatcgggttggcagagaaa
actgtgcaaatggctcttgggcaagctgccgtatattctgaaaaaaaagcttcaccacca
aaagttcaatcaccttttgaagaggctgcaacaataattaaacaagtatattcagttctt
ccaatctatgataaaattgtcccagcgctacttgaagttggagtttggaagcttccagaa
acatgcaaattttccataggtgttcccgttggtcctatgttagcaaaagcaacaaagtct
gtctcggagatcattgacaaattccagggtcttgagtacacttgtgagtacaagtatgat
ggtgaacgggctcagatacattgcatggaggatggatcagtagagatttatagtcggaat
gctgaaaggaacactggaaagtatccagatgttgttgatgcggtttctagattccgtaag
cctacaatcaaatcgtttgtcttggactgtgaaattgttgcctatgactatgaaaagcag
aaaattttaccttttcagatacttagcacaagggcccgcaagggtgttaccataaatgac
ataaaagtttcagtctgtacttttggctttgatattctttacttaaatgggaaacctctt
ctccaggaacaactcaaagttcgtcgagagcatctttacaactctttcgaggaagtacca
ggtgtttttcaatttgcaactgcaattacatcaaatgacctggaggagatacagaaattt
cttgacaaagctgtcaactccagttgtgaagggttgattatcaagacaatggataaagat
gctacatatgagccagcaaagcgatcaaacaattggttgaaactgaagaaggactacatg
gacagcattggagactctttggacttggtacctattgctgcctttttcgggagaggaaaa
agaacaggtgtctatggatcattcctcctggcatgctatgatgagcagaacgaagaatat
caaacaatatgcaacataggtactgggttttctgaacaacagcttgaagaacgttctgtg
agccttcgaagtaaagtgatagaaaaaccaaagccatactatagatttgctgacacaatg
gatccagacgtgtggtttgagccatcagaggtgtgggaggtcaaagctgcggatttgagc
ataagtcctgtacatcgtgctgctaatggtatagtcgatccaaataagggcatctcccta
agattccctcgtttgttgcgagtacgtgatgataaaagcccagaagaagcgaccacatct
gaacaagtagctgacatgtatcgggctcaaaagataaatcacgcatataatcaggaggat
gaggatgatgactaa

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