Phragmites australis (common reed): 133903742
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Entry
133903742 CDS
T10575
Name
(RefSeq) RNA-binding protein Y14A-like
KO
K12876
RNA-binding protein 8A
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133903742
09122 Translation
03013 Nucleocytoplasmic transport
133903742
03015 mRNA surveillance pathway
133903742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133903742
03041 Spliceosome [BR:
paua03041
]
133903742
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133903742
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133903742
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
133903742
NCBI-ProteinID:
XP_062201183
LinkDB
All DBs
Position
2:complement(23271044..23275891)
Genome browser
AA seq
193 aa
AA seq
DB search
MAAANAGDVEVVDFDSDDDDLMDDDAPEANPAPAAPRLRSTIAAGGDSAAAARKTKGRGF
REEPSSSRPLAGRGDFDSLGSDDGPGPLRSIEGWIILVTGVHEEAQEDDLHNAFREFGQV
KNLHLNLDRRTGFVKGYALIEYENFEEAQAAIKAMDGSELVTQIINVDWAFSSGPVKRRN
VRRRSRSPPRRRY
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgaacgcgggggatgtggaggtggtcgacttcgactccgacgacgacgac
ctcatggacgacgacgcccccgaggccaacccggccccggcggccccgcgcctccgttcc
accatcgccgccggaggggactccgccgctgccgcgcgcaagaccaagggccgcgggttc
cgcgaggaaccttcctcctcgcgccccctcgccggccgcggcgacttcgattcccttggc
tcggacgacggccccggccccctcagatctattgaggggtggattattttggtaactggg
gttcatgaagaagcacaggaggatgatctccataatgcttttcgggagtttgggcaggtc
aagaacctgcatttgaatttagatcgccgtactgggtttgtcaagggatatgctttgatt
gaatacgagaactttgaggaagcccaggctgcaataaaagcaatggacggaagtgagctt
gttacacagataataaatgttgactgggcatttagtagtggccctgtcaagcgaagaaat
gttcgcaggagatcaaggagccctcccaggaggagatactga
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