Phragmites australis (common reed): 133903757
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Entry
133903757 CDS
T10575
Name
(RefSeq) E3 ubiquitin-protein ligase HAKAI homolog
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133903757
04131 Membrane trafficking [BR:
paua04131
]
133903757
04121 Ubiquitin system [BR:
paua04121
]
133903757
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133903757
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
133903757
Membrane trafficking [BR:
paua04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
133903757
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133903757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_5
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
133903757
NCBI-ProteinID:
XP_062201199
LinkDB
All DBs
Position
21:complement(4897304..4900460)
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AA seq
494 aa
AA seq
DB search
MLQIRLSKIGSSDSGAAASGAAAAGGAPAKSAAAAAAALGGVPESVTVACPDHLVIADLP
VAKSLGAVTTSAASAKRTIGRRSRRPLGERVHICSRCEFPIAIYGRLIPCEHAFCLTCAR
SDSSCYLCDERIQKIQSVKMMEGIFICAAPMCLKSFLKKADFESHVPEAHSNLLQANVEK
EERNESDAPNISRASAGDTQRQSQMPEMSTARAPPRPGVSPTSTSHMQDREEHSRYHQSR
EQTPLRPPMLAKPPSFHGHHSYPTGDTQAENNPPQGFDRPYNWASQSHQENPGAATPLRQ
DSDHSTQDKQQLMANAPFMFPPMPPHQPNFMMPMNMNQPLMPNASFNYPPLQQDGNPQYF
GAPFQMQLPDARSDQGSVSGIQPSPGPLSFHEGLQRPWAMGLMGNPFQSMPFGQGMADGA
GDPQGVGGMAFMQAGFGGIPDGSINPGMPGQADRGDGRGILAQMPMPMQMQMSFPPPLPP
TQPPSGSQQSFSRT
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagatccgcctgagcaagatcggctcgtcggactccggcgccgccgcctccggc
gcggcagcggcgggcggagccccagcaaagtcggcggcagcggctgcggcggcgctgggc
ggcgtcccggaatcggtgaccgtggcgtgccccgaccacctggtgatcgcggacctcccc
gtggcgaagagcctcggcgccgtcacgacctccgccgcctccgccaagcgcaccatcggc
cgccgctcccgccgccctctcggagagcgcgtccacatctgctcccgctgcgagttcccc
atcgccatctacggccgcctcattccttgtgaacatgctttctgtttaacctgtgcaaga
agtgattccagctgctatctttgtgatgagcgcattcagaagatacagagtgtgaaaatg
atggaagggattttcatctgtgctgcaccaatgtgtctcaagtctttccttaagaaagca
gattttgagtctcatgtgcctgaagcccattccaacctcctccaagctaatgtagagaag
gaagaacgtaacgagtcagatgctcctaacatctcccgtgcttctgcaggggatactcaa
aggcaatctcaaatgcctgaaatgtctactgcacgtgctcctccaaggccaggtgtttca
cccacttcaacttctcacatgcaagatcgtgaagaacactcccgctaccaccagtccagg
gagcaaaccccactgaggcccccaatgcttgcaaaaccgccgtcattccatggtcaccac
tcatacccaacaggagatactcaggctgagaacaacccacctcaaggatttgaccggccc
tacaactgggcttctcagtcacaccaggagaacccaggtgcagcaactccgcttcgccaa
gattctgatcacagtactcaggacaagcaacaactgatggctaatgcaccgtttatgttc
ccgccaatgcctcctcatcagcccaactttatgatgcccatgaatatgaatcagcctttg
atgcccaatgcgtcattcaattaccctcctctccagcaagatggaaacccgcagtatttt
ggtgcacctttccagatgcaactaccagatgctcgatcagatcaaggttccgtgtcaggg
atccagccttcacctggtcctttaagcttccatgaggggcttcagcgaccatgggccatg
ggattgatgggcaatccatttcagtcgatgccctttgggcagggaatggctgatggtgca
ggtgatcctcagggtgttggtggtatggccttcatgcaggctggttttgggggcattcct
gatggttccataaatccaggcatgccaggtcaagctgatcgaggtgatggaagaggtatt
ctagcgcagatgcctatgccgatgcaaatgcagatgtcatttcccccacccctgccgcct
acacagcctccatcaggctcacagcaatcttttagcaggacttga
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