Phragmites australis (common reed): 133904354
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Entry
133904354 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133904354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133904354
03009 Ribosome biogenesis [BR:
paua03009
]
133904354
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133904354
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
U1 related factors
133904354
Complex B
133904354
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Helicases
133904354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133904354
NCBI-ProteinID:
XP_062201808
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All DBs
Position
2:complement(24429441..24435003)
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AA seq
796 aa
AA seq
DB search
MSVGSGSSGRAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNVTQYERPLPPENQLP
PPPPPLPPPPPRSRDRRDRSRSRSRTPPRRDHRDRDRDRDRRHDEHASSKSASSHHHPAP
AAAVADDPSTEAYRRRHEITITGDNVPAPITSFESGGFPSEILKEIQRAGFASPTPIQAQ
SWPIAMQNQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNTRSGPTVLVLAPTRELATQIL
DEAVKFGRSSRISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVSLKQVSY
LVLDEADRMLDMGFEPQIRKIVKEIPHRRQTLMYTATWPKEVRRIADDLLVHPVHVTIGS
VDELVANSAITQHVEVITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLSRTLTRQF
GASAIHGDKSQSEREKVLNHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYV
HRIGRTGRAGATGVAYTFFCDQDSKYASDLIKILEGANQKVPRDLMDMASRGGGRGRKRN
RWASHCDRGGSRSELDSRYSGRDGLTSSGRSESSRGGRRKDDYGGRGRSARGRSRSCSRS
DSDRYSRSPKRSRRHEVQARRSRTKSRSRSRSRSYSRNHRASCSRSRSPGASRRYEKSGA
GSRSARPDSGHPEHKSSPRAHSGNDHVKHSHLKDDHHLEDGKMEKVDLDRSPSPQDDKSA
PYSPVYNGKGSGSMSPNGQPEANAKSLIASDKPDPASPLHRRKSREDEEEGVIDEDGEIA
EIDPRASAAVQNGDGN
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcggaagcggctcgtccgggcgcgcggccccgcggtacgcgccagacgacccg
tcgctgccgaagccgtggcgcggcctcgtcgacggtaccaccggctacctctactactgg
aacccggagaccaacgtgacgcagtacgagcgccccctgccccccgagaaccagctccca
ccgccgccgcccccgctgcctccgccgcctccccggagccgcgaccgccgcgacaggtct
cgatcccgatcccgcaccccgcctaggcgtgatcacagggacagggaccgtgatcgcgac
aggcgccacgacgagcacgcatcgtccaagtcggcgtcttcccaccaccatcctgctccg
gccgctgccgtcgctgacgatccgtccaccgaggcataccgccgccgccatgagatcacc
atcacgggggataacgtgcctgctccgataacttcgttcgagtctggtggcttcccgtcc
gaaattctcaaggagatacaacgtgctggattcgcaagcccgacaccaatccaagcccag
tcatggccaattgccatgcagaatcaagatgttgtagctattgcgaagacgggatctggc
aaaactcttgggtatctgcttcctggatttatgcatattaagcgcctgcagaacaacaca
aggtctggtccaacagtgctagttttggcaccaacaagggaacttgcaacacagattctg
gatgaagctgtaaaatttggcagatcgtcgagaatttcttgcacgtgcctgtatggtggt
gctcctaaaggtccccagttaagagatttagatagaggggttgatgttgttgttgctacg
cctggaaggttaaatgacattctagaaatgcgaagggtaagccttaagcaagtctcatac
cttgttctggatgaggctgaccgcatgttggacatgggctttgagccacaaatacggaag
atagtgaaagaaatacctcaccgtcgtcaaactcttatgtacactgctacttggcctaag
gaagtccgaaggattgcagatgatcttcttgttcatcctgtccatgtgaccattggaagt
gttgatgaacttgttgctaatagtgctattactcagcatgtagaggtgatcacaccctcg
gaaaagcttagacgtctggagcaaatattacgatcccaggattcaggctcaaaagtatta
atattctgtaccactaagaggatgtgtgaccaactttcgaggacactcacgaggcagttt
ggagcttctgccattcatggcgacaagtcccaaagtgaaagagagaaggttctgaaccat
tttagatctgggcggtctcctattttggttgcaacagatgttgctgcacgaggtttagac
atcaaagatatcagggttgtgatcaactatgatttccctactggcgttgaagactatgtt
cacaggattggcaggacaggaagggctggtgccactggtgtggcctatacatttttctgt
gatcaggattcaaaatatgcttcagacctaatcaaaatcctggaaggggcaaaccaaaag
gtgccccgtgacttaatggacatggcttctcgaggtggtgggcgtggcaggaagcgtaac
cgctgggcatcccactgtgacaggggtggttcacgttccgaactggattctaggtatagt
gggagagatggactgacatcttctgggagatcagagagtagtcgtggtggccgtcgaaaa
gatgattatggtggccgtggcaggtctgctagaggtcgtagtagaagctgtagcaggagt
gacagtgataggtacagccgcagtcctaagaggtcacgccgccatgaggtgcaggctaga
cgtagcaggacaaagagtcggagccgaagcaggagcaggagttacagtaggaaccatcgt
gctagctgcagcaggagtcgtagccctggtgctagccgtaggtatgagaaatctggtgct
gggtctaggtctgcacggcccgactcagggcacccagagcacaaaagctctccaagagct
cactctggtaatgatcatgtgaagcactcccacctcaaggatgaccatcacctagaagat
gggaagatggaaaaggttgatcttgatcgctcacccagcccacaggatgacaagtctgct
ccatatagtcctgtgtataatggcaaaggcagtggctcaatgagccctaacggtcagcca
gaagctaatgccaaatctctcatagcttcagacaaaccagatcctgcgtctccattgcac
cgtaggaagagcagagaggatgaagaggaaggtgtcatagatgaagatggagagatagcc
gagattgatcctcgggcaagtgcagctgtgcagaatggtgatggtaactga
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