Phragmites australis (common reed): 133904423
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Entry
133904423 CDS
T10575
Name
(RefSeq) protein spotted leaf 11-like
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133904423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133904423
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133904423
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
U-box type E3
133904423
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
zf-RING_UBOX
Arm_2
zf-Nse
zf-C3HC4_4
KAP
Neurochondrin
zf-C3HC4_2
HEAT_EZ
zf-C3HC4
zf-rbx1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
133904423
NCBI-ProteinID:
XP_062201912
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All DBs
Position
22:18870480..18876257
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AA seq
681 aa
AA seq
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MAGGDRRGETTVEAAKERVAAAVEAVASGGWEFRNAYRRQLLALSRRIRLLGPFAEELRE
ARRAPVDEGKEERTLAPLAEALEKALELLRFGREGSRIFLVFERDNVMKKFQEVIAQLEQ
ALCDFPYDKLDISDEVREQVELVHAQLKRAKERVDMPDDEFYNDLLSLYNKSYNPSAEPA
ILERLSEKLHLMTITDLTQESLALHEMVASGGGQDPGEHIEKMSMLLKKIKDFVQTQNPE
MGPPIASKLMDSNGDPRPVTIPDEFRCPISLELMKDPVIVATGQTYERACIEKWLASGHH
TCPTTQQRMANTTLTPNYVLRSLIAQWCEANRIEPPKRLAQTNKPMSACSSSERANIDAL
LSKLCSPDPEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTA
LLNLSIHEDNKASIISCGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGTGA
IPALVVLLSEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEA
MAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGSPRNRENSAAVMLHLCSGEQQLKHLTR
AQECGIMVPLRELALNGTERGKRKAVQLLERMSRFLVQQQEEKEAQLQASAQALPQAPEP
VQETDIPEQLDSPAPQYPTVA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgaccgcaggggggagacgacggtggaggccgcgaaggagagggtggcg
gcagcggtggaggcggtggcatcgggcggctgggagttccggaacgcgtaccggcgccag
ctgctggcgctgtcccgccggattcggctccttgggcccttcgccgaggagctccgggag
gcgcgtcgggcgcccgtggatgaggggaaggaggagcggacgctggcgccgctcgccgaa
gcgctggagaaggcgctcgagctgctccgattcggtcgcgaggggagcaggatcttcttg
gtctttgagagggataatgtaatgaagaagtttcaagaagtaattgctcagctggagcaa
gctttgtgtgattttccatacgataaattggatatatcagatgaagttagagagcaggtt
gagttagtacatgcacagctcaaaagagcaaaggaacgggttgatatgcctgatgatgag
ttctacaatgacctgttgtctctatataacaagagctacaacccaagtgctgaaccggct
atccttgaaagattgtcagagaagttacacctgatgaccataaccgatctcacacaagaa
tctcttgctttgcatgagatggtggcatctggcggtggtcaggacccaggagaacacatt
gagaaaatgtcaatgctactgaagaagatcaaggatttcgtgcaaactcagaaccctgag
atgggcccaccaatagcttctaagctaatggattccaacggggatccaagacctgtaacc
attcctgatgagtttcggtgtccaatttctcttgagctgatgaaagatcctgttattgtt
gctactggccagacctatgagcgggcatgcatcgagaaatggctagcttctgggcatcac
acttgcccaactacacaacagaggatggcaaacacgacattgacaccaaactacgttctt
agaagtcttatcgcccagtggtgtgaagccaacaggattgagccacccaagcgcttggcg
cagactaacaagcctatgtccgcatgctcttcgagcgaacgtgctaacatcgatgctctt
ctgtccaagttatgctccccagatcctgaggagcagaggtcagctgctgcagagcttcgc
ctcctagcaaagcggaatgcaaacaaccggatctgcattgctgaggctggtgccattccc
ttactattgagtctactgtcgtcatctgacctgcggactcaagaacatgctgttactgca
cttctgaacctctccatacatgaggataataaggcaagcatcatatcctgtggtgctgtg
ccgagcatagttcatgttctgaagaatggcagcatggaggcacgggagaatgctgcagcc
acgctttttagtctctcagtgatcgatgaatacaaagtaacaattgggggaacaggggct
atccctgcccttgtagttttgttaagtgagggcagccagcgggggaagaaggacgcagca
gctgctctattcaacttgtgcatttaccaagggaacaagggtcgtgcgatacgagctggt
cttgtgccgctcatcatggggctggtgacaaaccccacgggagctctcatggacgaggct
atggcaatactctcaatactgtccagccaccctgaggggaaggcagcgattggggcagca
gagcctgtccctgtgcttgtggagatgattggaagtgggtcaccgagaaatagagagaat
tctgcagctgtgatgttgcatctttgcagtggtgagcaacagcttaagcatttgactcgt
gcacaggagtgcgggatcatggtccctctgcgggagctggcgctgaatggcacagaaaga
ggaaagaggaaggcagtgcagctgctcgagcgaatgagcagattcttggttcagcaacaa
gaggaaaaggaagcccagctgcaggcatcggcacaggccctccctcaggcccctgaacca
gtccaagagactgatatccctgaacaattggacagtcctgcacctcaatatcctacggtt
gcatga
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