Phragmites australis (common reed): 133904428
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Entry
133904428 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133904428
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133904428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133904428
03019 Messenger RNA biogenesis [BR:
paua03019
]
133904428
04121 Ubiquitin system [BR:
paua04121
]
133904428
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133904428
Transcription factors [BR:
paua03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
133904428
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133904428
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133904428
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133904428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
IBR_1
Nup35_RRM_2
PcfJ
zf-UDP
Motif
Other DBs
NCBI-GeneID:
133904428
NCBI-ProteinID:
XP_062201919
LinkDB
All DBs
Position
22:292584..300200
Genome browser
AA seq
1142 aa
AA seq
DB search
MMTMSDNGDRTCPLCAEEMDITDQQLKPCKCGYDICVWCWHHIIDMAEKEETEGRCPACR
TRYDKDRIGKMAATCERTVAEKVAEKKQKTQKVKPKAPAPATVEAKKHLASVRVIQRNLV
YIIGLPANLCNESVLERREYFGQYGKVLKVSVSRPTGPPSQQASANNNISVYITYAKEEE
AIRCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQQDSFTKDEI
ISAYTRTRLPQMASSVSQRRAGTILPPPADDSSYSTVASARHTVKNGTLNATNQPRLSPP
NSSSGRSTLPPAASWGHRDFNSRTTATGVTSSQSLTKSKSEPQSSSTISSTRIPSSWNDD
TSTVPNMSEVWQVSEQDSASKTVKPYKPGIAKETQALSSLESSVDIDFSTIPSAWNDDDI
VVSDGMSKGSEENQVANGNGKRTHVVSTSPMSPKKDTTVNSTSKSPSDFVSSLVASKSDV
KTDDGDHPVTNIAPKSPTLEDIGPRDSDIEKLAVRISSVILDGEDEVQSMAGDQQLDAVP
YTSVAVPMGQNFDKDQSHLKLAELLPSENKDTVRSCQYSSDKHLDWSSELQSCSMTPLND
IVNSSMNSDKHHITLLDGSVLPSYSSFTRFSNTSHASLWNDKESNPTLTIGSGTSSMMQT
GLLSSTDNTYDLLNGNQDGRGTVNTLGNVSGHPGMESHQPGAMGSVRTDSVRSFDKTVNV
NKDENRIISDILSSEFNPWDDSYSTANNFVRMLRESENNDVPFTVPSWKSGTSSKESRFS
FARQDNQGNFLDSSFRNCGHQQNFSLLSQNSHGHVCQNGLASHSLENDFSNSNPLALSDM
ATTGTSRSKVSAPPGFSVPARVPPPGFSSGFPSQDGLNPPPGFSSGISSQDGSIPPPRFP
SAFSSGISSREGSNPLPRFPSAFSSGFSSQHGPNPPSRFPPTFSSGFSSQDGSNQVFGST
YLETRFRDNLLGGNTNHYQPQLARHTSDIEFIDPAILAVGKGRMPGIGDSGLEMKNTPGF
PAQLQTSNSDPRIQLLMQQNVQSHQNMRFTEHSEDAFNLMNDNYLASRLLPQNHGSLSPY
AQMPPQQTRNSQHTNGHWDGWSDLRQGNNTPMSDMSRMLYPTEANNLHMLGSNDVYNRAF
GM
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatgagcgacaacggagaccgcacctgcccgctctgtgccgaggagatggac
atcactgaccagcagctcaagccatgcaaatgcggctacgatatttgtgtctggtgctgg
caccacatcatagatatggctgagaaggaggaaacagagggccgctgccctgcatgccgc
acgcgctacgataaggacaggattggcaagatggctgccacttgtgagaggacggtggca
gagaaagttgcagagaagaagcagaagacccaaaaggtcaaaccaaaggcacctgcacca
gcaactgtggaagctaagaagcatctggcaagtgtcagggtcatccagagaaacctggtg
tacataattgggctacctgcaaatttatgcaatgagagtgtacttgagcgcagggaatac
tttggtcagtatgggaaggttctgaaggtttcagtttctcgcccgactgggcctccttcc
cagcaggcatcagcaaacaacaatatcagtgtgtatattacttatgccaaagaagaagag
gccatccggtgtatacaagctgtacacaattttgtcttggaaggaaaagttttaagagca
tgctttggtactacgaagtattgccatgcatggctgcggaacatgacatgtgggaatcca
gattgtctctatttgcatgacgtaggcagtcagcaagatagcttcactaaagatgagatc
atctcagcatatacgaggactaggctgcctcagatggcatccagtgtttcacaaagacgt
gcagggactatattgcctcctccagcagacgattcctcttacagcacggtggcttcagcc
aggcatacagtcaagaatggaacacttaatgccaccaaccagcccagactttcacctcca
aacagtagttctgggaggtccacacttccaccagctgcttcgtgggggcatcgtgacttt
aattccagaacaacagctactggggtgacatcatcacagtctcttacaaaatcaaaatca
gagccacaaagttcttcaacgatttcaagtacaagaataccttcttcatggaatgacgat
acaagtacagtaccaaacatgtctgaagtatggcaagtgtcggaacaagatagtgcatct
aaaaccgtgaagccatataagcctggtattgccaaggaaacacaagctctatcatcactg
gagtcgtcggtggacatagacttctccacaataccttcagcttggaatgatgatgacatt
gtagtatcagatgggatgtcaaaaggaagcgaggaaaatcaagttgcgaatggaaatgga
aagcgaacccatgtagtgtctacgtcaccaatgtcacctaagaaagacacaacagtaaac
agtaccagcaaaagtccttcggattttgtatcaagtctagtagcatctaaatcagacgta
aagactgatgatggtgaccacccagttaccaatattgctcctaaaagccctacattagaa
gatattggacctagggactctgatattgagaagctagctgttcggatatcttcagtaata
ttagatggcgaagatgaggttcagagtatggcaggagatcaacaactagatgcagtacca
tacacttctgttgcggtgcccatgggtcagaattttgacaaggaccaatctcatttgaag
cttgctgagctcctgccttcagaaaataaggatactgttcgttcttgtcaatatagttct
gataagcatcttgattggagttcagagctgcaaagttgtagtatgactcctttgaatgat
atagtaaattcttcaatgaactctgacaaacaccatattacgctgctggatggttcagta
ctaccatcatattcatcatttacccgtttttctaatacatcacatgcttcattgtggaat
gataaagaaagtaaccctacattgacgattggcagtggaacttcctcgatgatgcagacc
gggttgttgtcttcaaccgacaacacttatgacttgttaaatggaaatcaagatgggcga
ggaactgtaaatacacttggtaatgtttctggacatcctggaatggaaagtcatcagcct
ggagcaatgggttcagtaagaactgatagcgtaagaagttttgacaagaccgtaaatgta
aataaggatgagaacagaataatttctgatatcttgtcatcagagtttaatccgtgggat
gattcgtactcgactgctaacaattttgttaggatgcttagagaatctgaaaataatgat
gtgcctttcaccgtgccttcatggaaatctggaaccagcagcaaggagtctagattttca
tttgctagacaggataaccaaggaaacttcttagattcatctttcagaaactgtggtcat
cagcagaatttcagtttgctatcccagaattctcatggacatgtgtgtcagaatggcctt
gcatcccattccctagagaatgatttttcaaatagcaaccctcttgctctgtcggatatg
gctactactggcacatcaaggtctaaagtatctgcacctcctggattttcagtgccagca
agagtcccccctcctggattttcttctggatttccatcccaggatggtttgaatccccct
cctgggttttcttctggaatttcatctcaggatggctctattccccctcctagattccct
tctgcattttcttctggaatttcatctcgggaagggtctaatcccctacctagattccct
tctgcattttcttctggattttcatctcagcatgggcctaatcccccttctagattccct
cctacattttcttctggattttcatcacaggatgggtctaatcaggtgtttggctcaaca
tacttagaaactcgtttccgagataatcttttgggtggcaacactaatcattatcaacct
cagttagccagacacacaagtgacatagaatttattgatcctgctatattggctgtgggc
aaagggcggatgcctggaattggtgattctgggctggagatgaaaaatacgcctggtttt
ccagcacagttgcaaacatcaaacagtgatccaaggattcagttactcatgcaacagaat
gtgcagtctcatcaaaacatgagattcacagaacatagtgaagatgcatttaaccttatg
aatgataattatctggcatcccgactgctaccacagaaccatggctctctatccccttat
gcacagatgccaccccaacaaactaggaactcacagcatacaaatggtcactgggatggc
tggagtgatttgagacaggggaacaacactcccatgtcagacatgtcgaggatgctgtat
ccaactgaagcgaacaacttgcacatgctgggttcaaatgatgtttataacagagccttt
ggaatgtga
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