Phragmites australis (common reed): 133904460
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Entry
133904460 CDS
T10575
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133904460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133904460
03036 Chromosome and associated proteins [BR:
paua03036
]
133904460
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133904460
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
133904460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
133904460
NCBI-ProteinID:
XP_062201967
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Position
22:complement(43457..49156)
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AA seq
910 aa
AA seq
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MFGSTNPFGQSSTSPFGQTQQGFGQATTAANNPFAPKPFGSPTTPFGAQTGSSPFGTTST
GAFGQQQSTPTFGTPSSSLFGSSTPAFSASPTPAFGAASSTFGSGSLFGQKPSFGGFGSS
PSQSSPFGTTFQQTQPTFGSSTFGATTTPAFGATTTPAFGATTTPAFGATTTPAFGTTTT
PAFGTTTTPAFGSTSTSLFGASSTPTFGSTAFGSSTPGFGNSGTTAFGVSSTQGFGAPSM
PSFGTSTSAFSFGSSASFGQTAASSGSSPFGTTPSPFGTQTSPFGSQTAAPTFGQAQFGN
QAGGTRIKPYTQTPDVDSATSGAQPAAKLDSISAMPEYKDKSHEELRWEDYQRGDKGGPN
PSGTVAATPIFPSSTQPNPLTGAFGQTTLNQFPSAATNNPFATKPTFASTGFAFNNPSAA
SASPFTSSTSTTLFGQTGGSAFPASSSPSLFPNTNPALASSSLFGTSSANTSPFSTGLSL
ANTQSVGLFQSSPAFAQHPSSTLAFSSGSQFSTPNSGGLFGSGSSIFSTLSFQPSAPAQT
SSMFFQSPTQPAPTGGFPGFSNTANQALIGQPTPSQSNMVMQPAPVSHPFGTLPAMPQMS
IGNAGSSPSVQYGISSLPVAEKPLPSRTLSMVVPRHLSQRRIKLLPRKYNPISDGKVPFF
ADDEESPATPKADAFFIPRENPRSLIIRPIDQWPSRSGIDRQLIPKDSADLEKYKGASAE
IERDKTAMSPSMPSPVENGNHFEPKQHWNGTSVERLIPKLPHADYFTEPSLEELAAKERA
EPGYCCRVRDFVVGRHGYGSIKFLGETDVRGLDLESIVEFNNREVIVYKDDSKKPPVGEE
LNKAAQVTLLRIKCMNKKTGEQYREGPRVDKYKEMLVKKAEEQGAEFVSFDAAKGEWKFR
VKHFSAYGFW
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctccaccaacccattcgggcagtcatccactagcccatttggccaaacccag
cagggattcggccaggctaccactgccgccaacaatcccttcgcaccaaaaccatttggc
agcccaaccaccccttttggggcacagactggaagctcgccttttggcactacatccact
ggcgcctttgggcagcagcaatccactcccacatttggcaccccgtcctcctctttgttt
gggagctccacgccagctttcagtgcatcgcccacccctgcctttggtgccgcatcctcc
acctttggctcaggatctttatttggacaaaagccaagttttgggggttttggatcatct
cctagccagtcaagtccttttggtaccacgttccagcaaacacagccaacatttggcagc
agtacttttggtgcgacaactacgccagccttcggtgcgacaactacaccggccttcggt
gcaacaactacgccggccttcggtgcaacaactacgccggcctttggcaccacaactaca
ccggccttcggcaccacaactaccccagcatttggttcaacgtcgacatctttatttggt
gcttccagcaccccgacgtttggttctacagcctttggttcatccactcctgggtttgga
aattcaggaaccacagcatttggtgtgagtagtactcaaggttttggagctccgagcatg
ccttcatttggcacatcaactagtgcattcagttttggttcttcggcatcttttggacaa
acagcagcttcgtctggtagctctccctttggcacaactccatcacctttcggcacacag
acttctccatttggctcacagacagcagcgccaacatttgggcaagcacaatttggtaac
caagctggaggaaccaggataaaaccttacactcaaacaccagatgttgacagtgctaca
agtggtgctcagcctgctgcaaaacttgattccatatcagcgatgcctgaatacaaagac
aagagtcacgaagaattgaggtgggaagattaccagcgtggagacaaaggtggaccaaac
ccttctggaactgtagcagcgacacctatctttccatcatctacacaaccgaatcctctt
actggtgcatttggccaaactactttaaaccaatttccatcggcagcaacaaacaatcca
tttgctactaagccaacttttgcttcaactggtttcgcgtttaataatccatcagctgca
agtgcgagcccattcacatcgtccactagtaccacactatttggacaaacaggtggttct
gcatttccagcaagtagttcaccgtctttgtttccaaataccaatcctgctcttgcttca
tcttcgttatttggcacatcatcagcgaatacaagtccattcagcactggcttgtcgttg
gctaacactcaatcagttggcctatttcaatcttccccagcgtttgcgcaacatccatca
agtacactggctttctcctctggaagccaattcagcacacctaactctggtggtctgttt
ggcagcgggtcttcaattttttcaacactatcatttcaaccatctgcccctgctcaaact
tcaagcatgttcttccaatctccgactcagccagctcctacaggtggattccctggtttt
tccaacactgcaaatcaggccctgattggacagccaactcctagccaatccaatatggtc
atgcagcctgctcctgtttcgcatccattcgggacacttcctgcaatgcctcagatgtcc
attggaaatgctggatcttctccttcggttcaatatggaatatcaagtttgccggttgct
gagaagcctcttccgagcagaacattatccatggtggttccgaggcatttgtcacagaga
aggataaaattgctcccaagaaaatataatccaatatctgatggcaaggttccattcttt
gctgatgatgaagaatctcctgcaacaccaaaagcggatgcttttttcatccctagagag
aacccgaggagcctgataatccgtccaatcgatcagtggccttcacggagtggaattgac
aggcaattgattccaaaggattcagctgatttggaaaaatataaaggtgcttctgcagaa
attgagcgtgataagactgccatgtcaccaagcatgccttctccagtggaaaatggcaat
cactttgagcccaagcagcactggaatggcacttcagttgagaggctgatacctaagctc
ccacatgcagattacttcacggagcctagcctagaggagcttgccgccaaggaacgtgct
gagccaggctactgctgtcgggtgagggactttgttgttgggcgtcatggttacggcagc
atcaagttcctgggggagacagatgtgagaggcctggatctggagtcaattgtggagttc
aataaccgcgaggtgattgtgtacaaggacgatagcaagaagcccccggtgggtgaggag
ctgaacaaagctgcacaggtgactcttctgaggatcaagtgcatgaacaagaagactggt
gagcagtaccgtgagggtccaagggtggacaaatacaaggagatgctggtgaagaaagct
gaggagcagggcgctgagtttgtgtctttcgacgccgccaagggagagtggaagttcagg
gtgaagcacttcagcgcctacggattttggtga
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