Phragmites australis (common reed): 133905362
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Entry
133905362 CDS
T10575
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
133905362
Enzymes [BR:
paua01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
133905362
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Collar
Motif
Other DBs
NCBI-GeneID:
133905362
NCBI-ProteinID:
XP_062203110
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Position
22:complement(1907306..1912070)
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AA seq
683 aa
AA seq
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MGAAAAGARSLLAVTLLIAVGASSLLHLAAAAAAAQGVTLHVDDPRQVLVDNGVVQVTLS
RPQGHITGVRYNGERNLLYYTGDGNSGGYWDVVWNYPGSDHPRGMIDMLDSTEFKVVSSS
EEQVELSFRSTYNPSLPNSVRLDIDKRLVMLKGSSGFYCYAILEHSKDWPALNIAEARLV
FKLSTDKFNYMAVSDDIQRYMPSMADRDLPRGVPLAYKEAVLLVDPKEPQFKGEVDDKYE
YSLDNKDNAVHGWISCNHPNRMGFWVITPSNEFKSGGPMKRELTSHVGPTSLTMFLGTHY
IGKDIVLNISDGEYWKKVLGPVFIYLNSSPKRGHLRALWEDAKAQAQAEVSKWPYSFPES
REFAKASDRGSVTGRLTVRDRCMSSNDDTPAPAGMAYIGLAAPGQPGSWATECKNYQFWT
RATPCGRFTIGNVRAGVYNLYAWVPGFLGDYMHTSSVTVTPGGAIDLGDLVFEPPRSGPT
LWEIGVPDRTAAEFFVPDADPKYRNGLFLSKDKYRQYGLWERYADLYPGNDLVFTVGQSN
HSRDWFFAHVTRKVGDANVPTTRQIRFNLDRVVADGTYTLRIALAAAHMSRLQIVVNGGA
RRGGVFTTPEFGDGNAIARHGIHGVQWSFDFPIRGYLLVEGENSISITQTRALSEFLGVM
YDYVRLEGPPGAWRDPTRGDRIR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgcggctgctggtgcaaggtcactgctggccgtcaccctgctcatcgccgtc
ggagcgtcgtccctactgcacctcgccgccgccgccgccgcagcccagggtgttacgtta
cacgtcgacgaccctcgccaggtgcttgtcgacaatggcgtggtgcaggtgacgctgtcc
aggccgcagggccacatcaccggcgtccgctacaacggcgagcgcaacctgctgtactac
accggcgacggcaactcgggagggtactgggatgtggtttggaactatccagggtccgat
cacccaagagggatgatcgatatgttggatagtacagagttcaaagtagtatcatcaagt
gaagaacaagtggagctttctttcaggagcacatataatccatcacttccaaacagcgtt
cggctagacatcgacaagaggcttgtgatgctgaaaggcagctctgggttctactgctac
gccatcttggagcactccaaggattggcctgctctgaacattgcagaggctcggctcgtc
ttcaaactcagcacggacaagttcaactacatggcggtttcagacgacatacagaggtac
atgcccagcatggcagacagagacttacctcgtggtgttccattggcctacaaggaggct
gttctgctcgttgaccccaaggagccacagttcaaaggggaggtggatgacaagtatgag
tactcgctggacaacaaggacaacgctgtccatgggtggatcagctgcaaccatccgaat
cgcatggggttctgggtcatcacgcccagcaacgagttcaagagcggcggcccgatgaag
cgggagctcacctcccacgttggccccacctccctcaccatgtttcttgggacgcattac
atcgggaaggacatagttctgaacattagcgacggcgagtactggaagaaggtgctgggg
ccggtgttcatctacctcaactcgagcccgaagcgaggccacctccgggctctctgggag
gacgccaaagcgcaggcgcaagccgaggtcagcaaatggccgtacagcttccccgaatca
cgggagttcgcaaaggcaagcgacagaggctccgtcaccggcaggctcacggtcagagac
aggtgcatgagcagcaacgacgacacgcctgcccctgccgggatggcgtacatcgggctc
gccgcgcccgggcagcctggatcctgggcgaccgagtgcaagaactatcagttctggaca
agggccacgccctgcggcagattcaccatcggcaatgtccgggcaggggtgtacaatctc
tacgcatgggttcccgggttcctcggagattacatgcacacttcttctgtgaccgtaacg
ccaggtggtgctatcgacctcggcgatcttgtgttcgagcccccgagatcaggcccgacg
ctgtgggagatcggagtcccggacaggactgcggcggagttcttcgtccctgacgccgac
cccaagtaccgcaacgggctctttctgagcaaagacaagtacaggcagtacggtttatgg
gagaggtacgccgacttgtaccctggaaacgatcttgttttcacggttggtcagagcaat
cactccagggactggttctttgcgcatgtcacaaggaaggttggcgatgccaatgtgcca
acgacacggcagatacggttcaacctggaccgcgtcgtggcagacggcacctacactctg
cgcattgctcttgcggctgctcacatgtccagattgcagattgtagtgaacggaggtgcg
aggagaggcggagtgtttacgacgccggagttcggcgacggcaacgcgatcgcgcggcac
gggatccacggcgtgcagtggagcttcgacttccccatcagggggtacctgctggtggaa
ggcgagaacagcatcagcatcacccagacgagagccttgagcgagttcttgggggtcatg
tacgactacgtccggctggaagggcctcccggggcgtggcgagacccgacgcgaggcgat
cgaattcgctag
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