Phragmites australis (common reed): 133905406
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Entry
133905406 CDS
T10575
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133905406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133905406
03012 Translation factors [BR:
paua03012
]
133905406
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133905406
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133905406
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133905406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
AAA_16
NACHT
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
133905406
NCBI-ProteinID:
XP_062203182
LinkDB
All DBs
Position
1:complement(8377995..8391671)
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AA seq
1240 aa
AA seq
DB search
MLLASVLRGRVRFLRQPRPLIMPSPFFLSRNPNPSPSTTSPYLSSPPASAAMSTSGVYVP
PMRRLRSVIASTNGSLAPPPSAVAQTQQTARTPEWRKDGRSLSPPSPPQARRRETPPLPR
PPQPEHFRQQSAGYARYAYDDFSEDDSDREMDRTSVSSKGASTLDNVNEWKWKLHMLLRN
DDEQEIISRERKDRRDFEQLAQLADRMGLYSRQYSRIVVFSKVPLPNYRSDLDDKRPQRE
VSIPAGLQREVDALLADYRARKRMNSGSFTNAAFSRSSSTDSFATDEGFFEQQDNQTSTN
AVMERIQRRKSLQLRNQQAAWQESSEGQSMMEFRHSLPSYKERETLLEAVSQNQVVVVSG
ETGCGKTTQLPQYILESEIDAARGASCSIICTQPRRISAISVSERVAAERGEKIGESVGY
KVRLEGMKGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDL
LPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRTHFLEDILESTGHRLTPYN
QIDDYGQEKSWKMQKQALRKRKSQIASVVDDAVEAADLRNYSSQTRDSLSCWNPDSIGFN
LIENVLCHICQKERPGAVLLFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSE
QKLIFEKPEPGVRKIVIATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWIS
KASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSIS
EFLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTILGKHLSMLPVEPKLGKMLILGAIF
NCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYEGWREAERD
RAGYDYCWKKFLSMQTLKAIDSLRRQFLYLLKDTGLVDENMTLCNKWSRDENLVRAVICA
GLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKVNSVFLRD
STAISDSILLLFGGNIQQGGLDGHLKMLGGYLEFFMNRDLASTYLSLKSELENLIHCKLQ
NPRMDIHTSEELLSAIRLLVTEDPCSGRFVYGRQEPRLKKAKTMLSSASMSTGGGHGGEN
PKNQLQTLLTRAGHDNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKLAEKDTAGEAL
NWLMGDGVGAPTDSRDARDLDHMSTLLKPPRRRRHSHRRS
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgctcctggcctccgtcctgcggggtcgcgtccgcttcctccgccagccccgccccctg
atcatgccctcccctttcttcctctccaggaaccctaatcccagcccgagcacgactagc
ccctacctctcgtcgccccccgcgtctgccgccatgagcaccagcggggtctacgtgccg
cctatgcggcgactacgctccgtaatcgcgtccaccaacgggagcctcgcgccgccgccg
tccgctgtggcgcagactcagcagacggcgcggacgccggaatggcggaaggacggccgc
tcgctcagccccccatcgccgcctcaggcacggcggcgcgagacgcctcccctgccgcgg
ccgccccagccagagcatttccggcagcagagtgctgggtacgcccgctacgcctatgat
gatttctcagaggatgactcggatcgagagatggatcgcacatccgtttcgagcaagggt
gcatccactttagataatgtcaatgaatggaaatggaaactgcacatgcttctccggaat
gatgatgagcaagagattatctcaagggaaagaaaggataggcgagattttgaacaactt
gcccaactggctgatcgaatgggcttatacagccgtcagtattctaggattgttgtgttt
agtaaggttccattgcctaattatagatcagatcttgatgacaaaagacctcagagagag
gtatctatacctgctggcttgcaaagagaagttgatgcattgcttgcagattatcgtgca
cgaaagagaatgaacagtgggagctttactaatgcagccttctcaaggtcaagcagcaca
gacagttttgcaactgatgaaggcttttttgagcagcaagataatcagacttcaactaat
gctgttatggagagaattcaaagaaggaaaagcctacagttgcgcaaccagcaggctgct
tggcaggaatcaagtgaaggtcaaagcatgatggagtttcgccacagtcttccttcttat
aaagaaagagaaacattattggaagctgtatctcagaaccaggttgttgtagtttcaggt
gaaacaggctgcggcaagacaacacagctaccgcaatacattttagaatctgaaatagat
gctgctcgtggtgctagttgcagtattatttgcactcaaccaaggcgaatatcagctatc
tctgtttccgaaagagttgctgctgaaagaggcgaaaaaatcggtgaatcggttgggtac
aaagttcgattggaagggatgaaaggaagggatacacgccttcttttctgcaccactggg
gtcctgttgcggagattgctggtggatagaagcctgaaaggtgttacccatgttattgtt
gatgaaatccatgagcggggcatgaatgaagatttcctacttattgtcctcaaggatctt
cttccacgccgtcccgagctaaggcttatattgatgagtgcaactcttaatgctgagctg
ttctcttcatactttggtggagcacccatgatacatatacctggttttacatatcctgtc
cggactcattttctagaagatatccttgaatctactggtcaccgattgactccgtacaac
caaattgatgactatggtcaagaaaaaagttggaagatgcaaaagcaagctttaaggaag
aggaagagtcaaattgcttctgttgtggacgatgcagttgaagctgctgatttgaggaac
tatagttcacaaactcgtgactcgctatcctgttggaatcctgattcaattggtttcaat
ttaattgaaaatgtattatgccatatttgtcaaaaggaaagacctggtgctgttctttta
tttatgactgggtgggatgacattaatgcactaaaagagcagctgcaagcaaacccgctg
cttggagatcctagcaaagttttgctgctcgcatgtcatggttcaatggctagctcagag
cagaaactaatatttgagaagcctgagcctggagtaaggaaaatagttattgccactaat
ttggctgaaaccagtattactatcaatgatgtagtgtttgttgttgactgtggaaaagca
aaagagacttcttatgatgcactgaataatactccctgtttacttccaacctggatctcc
aaggcttcggccagacaaagacggggaagagctggccgagtccaaccaggggagtgctac
catctttacccacgatgtgtatatgatgcatttgctgactaccagttaccagaacttctg
agaactcctctccaatccctctgtttgcaaataaaaagcctgaggctgggaagtatatca
gaatttttatccagagctttgcagtcaccagagtctctatcggtacaaaatgccattgaa
tatctcaaagtcattggagcatttgatcaaaatgaagagttgacaattctaggaaagcac
ttgtctatgcttccagttgagcctaagttaggcaagatgcttattttgggggctattttt
aattgtttggatcccatattaaccattgtttctggacttagtgtgagagatccatttttg
actccattcgacaagaaggatcttgcagaatcagctaagttacagttttcatgccgagac
tacagtgatcatcttgcacttgttcgtgcatacgagggatggagagaggctgaaagagat
cgtgctggctatgactactgctggaaaaaatttctttccatgcaaaccttgaaagccata
gattcccttcggaggcagtttctctatcttctgaaggatactggtttggttgatgaaaac
atgactttgtgcaataaatggagtcgtgatgaaaatctagttcgggcagtaatttgtgca
gggctatatccaggtgtttcgtctgttgtgaacaaggagaaatcaatttctctcaagaca
atggaagatggacaggtcatgctttattcgagttcagttaatggtaaagaagctaagatt
ccattcccctggctagtgttcaatgagaaggtgaaggtgaattctgtttttctccgggat
tcaactgctatatctgattctatattattgctcttcggaggcaacatacaacaagggggc
ctggacggacacttgaaaatgcttggaggttatctggagttcttcatgaatcgtgatctt
gcatcgacttatttgagcctcaagagtgaacttgagaatttaatccattgcaagctccaa
aacccgaggatggacattcataccagtgaagagctgttatcagccatccgtttgctggtc
acagaggacccatgcagtggtcgctttgtctatggacgacaggagccaagattgaagaaa
gcaaagacaatgctctcatcagcctccatgagcaccggaggtgggcacggaggggagaat
cccaagaatcaactccagacccttctaacccgggctggccatgacaatccgtcctacaag
acgaagcaaatcaagaacagcctcttcaggtctacagttgagttcaacggcatgcagttc
gtcgggcagccgtgcgccaacaagaagctcgcggagaaggacacagcgggagaggcgttg
aactggctcatgggagatggcgtaggagcgcccactgactcgagggatgcccgagacttg
gatcacatgtctacgctgctgaaaccgccacgcaggaggcggcatagccatcgtcggagt
tga
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integrated database retrieval system
