Phragmites australis (common reed): 133905874
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Entry
133905874 CDS
T10575
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133905874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133905874
03036 Chromosome and associated proteins [BR:
paua03036
]
133905874
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133905874
Coactivators
SAGA/TFTC/STAGA complex
133905874
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
133905874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
133905874
NCBI-ProteinID:
XP_062203642
LinkDB
All DBs
Position
23:17379526..17390160
Genome browser
AA seq
775 aa
AA seq
DB search
MSKATDGQLQETEQEGNAQASQQAGQHHVNVSDQFSKPELVTEGSKNEQPVQVDQQNSHL
QQEQPENRLQQAETDSFQLAEKETGYFGQQSFAGSKVDVAQPSVVQQNVKQIVGQQAPSG
AQDTRKGPSIPFNMLIPILQAHLDRDKDMQLQTVWAKLRRNEVHKDDFLRVIRNIVGDQM
LKQAAHKVFVQMQAQAQRNNQANPSQHSLFSQVSAQQTPSSGSAQLHDQKVSPTGPPNQG
QKSQVSSSPQAFAPPSGTQAQNSVHYLAHANPNQNPDAMGTNATQNQPPRVNPAISLQTK
NKQPQPTQFQQASQQIYGAGNPGAQAYPRSITGSLRSPSPEPERQPSMHAHGMAPAKIGP
PPTHPMMQHNAVAWQMHQNKELKTNALPPNANAKENSESAGKARVVTANSSAKGKQGPPN
SSTPNASGGAKSNKKSGGQKKSLEAAGSMLPPSSKKQKTSGTFQAQSIDQLNDVTAVSGV
NIREEEEQLLSAPKEESLASQTARRIAQEEEEELFLREGPLLKKLAEITLKCNLKNISGD
VEHCLSMCVEERLRRFISTLIRVSEQRIDAEKTGHRLVITSDVGRQILLMNQKAKEEWDK
KQAEEADKNKKQTEADGGGGVELEKEKEESRPKNVKPNKEDDDKMRTNAANVAARQAVGG
SDMLSKWQLMAEQARQKREGLDVAAAPQPGRGPGSRSLSKLGKGPGDHQEASKRSHSAAF
GSGGMKRPGRAQFTGPQRTISVKDVISVLEREPQMTKSRLIYRLYERLPGDSTAD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagctacagatggtcagctgcaagaaacagagcaggaaggaaatgctcaggca
agccaacaagcagggcaacatcatgtgaatgtatcagatcaattctccaaaccagaactg
gtaactgaaggttcaaaaaatgaacaacctgtccaagtagaccaacagaattcccaccta
caacaagaacagccagaaaatcgactgcaacaggctgaaacagatagcttccagttagct
gaaaaagaaacagggtattttggtcaacagagttttgcaggctccaaggtggatgtagct
cagccctcagtagtccagcagaatgtgaagcaaattgttgggcagcaagcaccatctggt
gcccaggatacaaggaaagggccatctataccatttaatatgttaattccgatcctacag
gcacatcttgatagagacaaagatatgcagcttcaaactgtatgggcaaaacttaggcgc
aatgaagtccacaaagatgatttcttaagagtcatcaggaatatcgttggggatcaaatg
ctgaagcaggcagcccataaagtttttgtacagatgcaagcccaggcacaaagaaataac
caggcaaatccaagtcagcattctctattctctcaagtgtctgcacagcagactccttcc
agtggttcagcacagttgcatgatcagaaggttagcccaactgggccacctaaccagggc
cagaaaagccaggtgtcatcttcacctcaggcttttgcaccaccgtcaggcactcaagcg
caaaatagtgtacactatcttgctcatgctaatcccaaccaaaaccctgacgcaatggga
acaaacgctacacaaaatcaaccacctagagtgaacccagcaatttcattgcaaacaaag
aacaaacagccgcaacccacacaattccagcaggcctcacagcaaatatatggagcaggt
aaccctggtgcccaggcttaccctcggtcaatcactggttctcttagatcaccgagtcca
gaaccagagagacagccgtccatgcatgctcatggaatggctcctgcaaaaattggccct
cctcctactcacccaatgatgcagcacaatgcagttgcatggcaaatgcatcaaaacaag
gaattgaaaaccaatgctctccctcctaatgctaatgcaaaggaaaattccgaatctgct
ggcaaggcccgcgtggttacagcaaattcttcagcgaaaggaaagcagggaccccctaac
tcatctacaccgaatgctagtggaggtgcgaagagtaacaagaaatcgggtgggcaaaag
aaatcattggaagcagcaggctctatgctgccaccttcaagcaaaaagcaaaagacatct
ggaaccttccaggcacaaagcattgatcaacttaatgatgtcacagctgttagtggtgtt
aatattagggaggaggaagaacaactactgtctgcccccaaggaagagagccttgcctca
caaacagcacgaagaattgcacaggaagaagaagaagaactctttttacgggaaggccca
cttctcaagaaactagcagaaatcactctgaaatgcaatctgaagaacattagtggtgat
gttgagcattgtttatcaatgtgtgtggaggagcggttgcgaagattcataagcactctc
ataagagtctcagaacagagaattgatgctgaaaaaactgggcatcgactagttattact
tcagatgttggccgtcaaattttgctaatgaaccagaaagctaaagaagaatgggataaa
aaacaagcagaagaagctgacaagaacaagaaacaaactgaggctgatggcggtggtggt
gtagagctggaaaaagaaaaagaggaaagtcgtccaaagaatgtcaagcccaacaaagaa
gatgatgataaaatgagaacgaatgctgcaaatgttgccgcccgacaagcagttggagga
agcgatatgctctcaaagtggcagctgatggctgaacaagccagacagaagcgagaaggc
cttgatgtggctgctgctccacaaccaggtagagggccaggttcaaggtcattatccaag
cttgggaaaggccccggtgaccaccaggaagcttcaaagaggagccattctgcagcgttc
ggatctggaggcatgaaaagaccgggcagggctcagttcacaggaccgcaacgaaccatc
tccgtcaaggatgtgatcagcgtcctcgagagggaacctcagatgacgaaatcgcggctg
atctaccggctgtacgagcggttgcctggagattctaccgcagactag
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