Phragmites australis (common reed): 133905908
Help
Entry
133905908 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133905908
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133905908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133905908
03019 Messenger RNA biogenesis [BR:
paua03019
]
133905908
04121 Ubiquitin system [BR:
paua04121
]
133905908
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133905908
Transcription factors [BR:
paua03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
133905908
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133905908
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133905908
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133905908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Rtf2
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
133905908
NCBI-ProteinID:
XP_062203694
LinkDB
All DBs
Position
23:complement(3144672..3155849)
Genome browser
AA seq
1194 aa
AA seq
DB search
MSDDGDRTCPLCAEEMDITDQQLKPCKCGYDICVWCWHHIIDMAEKEETEGRCPACRTRY
DKDRIVKMSATCERTVAEKNAEKKQKTQKVKPKAAATATVEAKKHLASVRVIQRNLVYII
GLPANLCNESVLERREYFGQYGKVLKVSVSRLTGSLSQQASANNNISVYITYAKEEEAIR
CIQAIHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIISA
YTRTRVPQMASSVSQRRSGIVLPPPADDFSYSAVVSARHTVKNGTLNTTNQPRLSPPNSS
SGRSTLPPAASWGHRDLNARTTATGVTSSQSLTKSKSEPQSNSFSSTRIPSSWNDETSTL
PNMSEGRHVSEQDSASKTVKPYRPGIAKETQALSSLESSLDIDFSTIPSAWNDDDIVVSD
GMSKGSEENQVVSGNGKLTHLVTNSPISPKKDTTVNSTSKSPSDFVSSLAISKSDKKTGD
GDHPVASVAPKSPISKDVNCQSNHAASKKILEDIGPRDTDVEKLSVWISSAALDGKDEVQ
SMAGNQQPDAVPCTSVAVSEDQNFDKDQSHLKLSELLPSENKDTVLSCLSSSDKHLDWTS
ELQSCSVTPLNDIVNTPMNTDKHHITLLDGSEQPSYSSFARFSNTSHTSLWNDKESNPTV
TIGSRTSSMMQTGLLSSTDNTYALLNGDQDGLGTICTLGNVSGHPGMESHQPGAMGSVRT
DSLGSFDKTISINKDESRIISDILSSEFNPWDDSYSTANNFVRMLRESESNDAPFTAPSW
KSGTSSKESRFSFARQDNQGNFLDPSFRNCGSEQNFSLLSQNSCGNVHQNGLALQSLEND
FSNSSSLAMSDMATTGTSRSKISAPPGFSAPARAPPPGFSSGFPSQDGLNPPPGFSSGIS
SLDGSIPAPRFPSAFSSGISSQEGSNPPPRFPSAFSSGISSQEGSNPPSRFPPAFSSGFS
SQDGPNTPFRFPPAFSSGFSSQDRPNTPSRYTRTFSSGFSSQDGSNQVYGSTFPESRFHD
NLLGGNTNHYQPQLARHTSDMEFIDPAILAVGKGRMPGIGESGLEMKNTPAFPAHFQASN
NDPRIQLLMQQNMQSHQNARFTDHSQDAFNPMNDNYLASRLLPLNHGSVSPYAQMAPQQA
RNSQLTNGHWDGWSDLRQGNNAPMSDMSRMLYPSEANKLHMLGSNDLYNRAFGI
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacggagaccgcacctgtccgctctgtgccgaggagatggacatcactgac
cagcagctcaagccatgcaaatgcggctacgatatttgtgtctggtgctggcaccacatc
atagatatggctgagaaggaggaaacagagggtcgctgccctgcatgccgtacgcgctat
gacaaggataggattgtcaagatgtctgccacttgtgagaggacggtggcagagaaaaat
gcagagaagaagcagaagacccaaaaggtcaagccaaaggctgcagcaacagcaactgtg
gaagctaagaagcatctggctagtgtcagggttatccagagaaacctggtgtacataatt
gggctacctgcaaatttatgcaatgagagtgtacttgagcgcagggaatactttggtcag
tacgggaaagttctgaaggtttcagtttcccgtctgactgggtctctttcccagcaggca
tcagcaaacaacaatatcagtgtgtatattacttatgccaaagaagaagaggccatccgg
tgtattcaagctatacacaattttgtcttggaaggaaaagttttaagagcatgctttggt
accacgaagtattgccatgcatggctgcggaacatgacatgtggaaatccagattgtctc
tatttgcatgacgtaggaagtcaggaagatagtttcactaaagatgagatcatctcagca
tatacgaggactagggtgcctcagatggcatccagtgtttcgcaaagacgttcagggatt
gtattgcctcctccagcagatgatttctcttatagtgcggtggtttcagccaggcacaca
gtcaagaatggaacacttaataccaccaatcagcccagactttcacctccaaacagtagt
tctgggaggtccacgcttccaccagctgcttcgtgggggcatcgtgacttgaatgccagg
acaacagctactggggtgacatcatcacagtctcttacaaaatcaaaatcagagccacaa
agtaattcattttcaagtacaagaataccttcttcatggaatgatgaaacaagtacatta
ccaaacatgtctgaaggacgtcatgtgtcggaacaagatagtgcatctaaaaccgtaaag
ccatataggcctggtattgcaaaggaaacacaagctctatcatcactggagtcgtcgctg
gacattgacttctccacaataccttcagcttggaatgatgatgacattgtagtatcagat
gggatgtcaaaaggaagcgaggaaaatcaagttgtgagtggaaatggaaagttaacccat
ctagtgactaattcaccaatatcacctaagaaagacacaacagtaaacagtaccagcaaa
agtccttcagattttgtatcaagtctagcaatatctaaatcagacaaaaagactggtgat
ggtgaccacccagttgccagtgttgctcctaaaagccctatttcaaaagatgtaaactgc
caatctaatcatgctgccagcaagaaaatattggaggatattggacctagggacactgat
gttgagaagctatctgtttggatatcttcagcagcattagatggcaaagatgaggttcag
agtatggcaggaaatcaacaaccagatgcagtgccatgcacttctgttgcagtgtccgaa
gatcagaattttgacaaggaccaatctcatttgaagctttctgagctcctgccttcagaa
aataaggatactgttctttcttgtctatctagttctgataagcatcttgattggacttca
gagctgcaaagttgtagtgtgactcctttaaatgatatagtaaatactccaatgaacact
gacaaacatcatattacgctgctggatggttcagagcaaccatcatattcatcatttgcc
cgtttttctaatacatcacatacttcattgtggaatgataaagaaagtaaccctacagtg
acgattggcagtagaacttcatcaatgatgcagactgggttgttgtcttcaaccgacaac
acttatgccttgttaaatggagatcaagatgggctaggaactatatgtacacttggtaat
gtttctggacatcctggaatggaaagtcatcagcctggagcaatgggttcagtaagaact
gatagcttaggaagttttgacaaaaccataagcataaataaggatgagagcagaataatt
tctgatatcttgtcatcagagtttaatccgtgggatgattcgtactcgactgctaacaat
tttgttaggatgcttagagaatctgaaagtaatgatgcacccttcactgcgccttcatgg
aaatcaggaaccagcagcaaagaatctagattttcatttgctagacaggataaccaagga
aacttcttagatccatctttcagaaactgtggtagtgagcagaatttcagtttgctatcc
cagaattcttgtggaaatgttcatcagaatggccttgcactccaatccctagaaaacgat
ttttcaaacagcagctctcttgctatgtcggatatggcaactactggcacatcaaggtct
aaaatatctgcacctcctggattttcagcgccagctagagcaccccctcctggattttct
tctggatttccatcccaggatggtttgaatccccctcctgggttttcttctggaatttca
tctctggatgggtctattcccgctcctagattcccttctgcattttcttctggaatttca
tctcaggaagggtctaatcccccacctagattcccttctgcattttcttctggaatttca
tctcaggaagggtctaatcccccttctagattccctcctgcattttcttcaggattttca
tctcaggatgggcctaataccccttttagattccctcctgcattttcttctggattttcg
tcacaggacaggcctaacaccccttctagatacactcgtacattttcttctggattttca
tcacaagacgggtctaatcaggtgtatggctcaacattcccagaaagtcgtttccatgat
aatcttttgggtggcaacactaatcattatcaacctcagttagccagacacacaagtgac
atggaatttattgatcctgctatattggctgtgggcaaagggcggatgcctggaattggt
gagtccgggttggagatgaaaaatacccctgcttttccagcacactttcaagcatcaaat
aatgatccaaggattcagttacttatgcaacagaacatgcagtctcatcaaaatgcgaga
ttcacagaccacagtcaagatgccttcaaccctatgaatgataattatctggcatcccga
cttttaccactgaaccatggttctgtgtccccttatgcacagatggcgccccaacaagct
agaaactcacagcttacaaatggtcactgggatggctggagtgatttgagacaagggaat
aacgcccccatgtcagacatgtcgaggatgctatatccaagtgaagcgaacaagttgcac
atgctgggttcaaatgatctttataacagagcctttggaatctga
DBGET
integrated database retrieval system
