Phragmites australis (common reed): 133906250
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Entry
133906250 CDS
T10575
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
paua03036
]
133906250
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
paua00535
]
133906250
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
133906250
Meiosis-specific proteins
Cohesin complex and associated proteins
133906250
Proteoglycans [BR:
paua00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
133906250
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
Motif
Other DBs
NCBI-GeneID:
133906250
NCBI-ProteinID:
XP_062204079
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Position
23:complement(20724270..20739451)
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AA seq
1204 aa
AA seq
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MYIKKVIIEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSED
RGALLHEGAGHSVVSAFVEIVFDNSDNRIPVDKDEVRLRRTVASKKDEYYLDGKHVSKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEDRRRESLKIMQ
ETANKRKQIDQVVHYLEERLRELDEEKEELKKYQQLDKQRRSLEYTILDHELNDARNELA
SMDDNRRKISERMSHADNEVVDVREKIKSFDKEIKVSTKGINDTKGQKEDVEKRRTEALK
VVAQIELDLRDIKDRISSEKRAKDEAARDLHSVRRESEKSKSELAEISKVHQAKLKEEEE
ISKSIMDREKRLSILYQKQGRATQFANKAARDKWLQKEIEDLEPVLLSSRKQEGLLQEEI
QKLKDEINNLTNYIESRKNDSTKLEAALAKKHNDYNDLRKQRDMLQEERKSFWKEESDVT
AEIDRLREDLMKSQKSLDHATPGDIRRGLHSVSRIIKDHGIKGVFGPVLELVDCEEKFFT
AVEVTAANSLFHVVVENDDISTRIIQLLTREKGGRVTFIPLNRVKVPDVSCPQSSDFVPL
LKKLKYRADHRRAFEQVFGRTVICRDLETATRVARSHGLDCITLDGDQVARKGGMTGGFY
DSRRSKLKFVKIIRDNKTAIEKKTVHLENVGNKLKDIDKKITDLVTKQQQMDAERDHAKS
ELEQFRVDIASAMKQKGSIEKALGKKEKSLDNIRNQIEQIQSSIAMKNDEMGTELIDQLT
PEERDLLSRLNPEITELKEKFLLCKNSRIEIETRKEELETNLSTNLIRRQKELEAIISSA
DSRTLPMEAESKEQELKSSKRNLDELTSLLKANVDAINNFSRKMDELKRQRDDLKTLEAS
LEQTVQDGAKDLEQLMNSRSIHLAKQEECMKKIRDLGSLPADAFEAYKMKNKKQLQKILY
ECNEQLKQFSHVNQKALDQYVNFTEQREQLQRRRAELDAGDQKIRELISVLDQRKDESIE
RTFKGVARHFREVFSELVQGGHGYLVMMKKKDGDAGDDDNDEDGPREPDPEGRIEKYIGV
KVKVSFTGKGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAV
GNMIRRLADMADTQFIATTFRPEIVKVADKIYGVTHKNRVSFINVVSKEQALDFIEHDQT
HNAS
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgtatataaagaaggtcataatcgaagggtttaagagctacagggaggagatctcaaca
gaacccttcagccccaaagtcaacgtagtcgttggtgcaaatggatctggcaaatcaaac
ttctttcatgctatacgatttgtcctgagcgacatgtttcagaacctgcgaagtgaagat
aggggtgcccttcttcatgaaggtgctggacactcggttgtatctgcttttgttgagata
gtgtttgataattcagacaaccgtattccagttgataaggatgaggtacgcttgcgcagg
acggtcgcttcaaagaaggatgaatactatttggatgggaagcatgtcagtaaaactgaa
gtcatgaatctgctggagagtgctggtttctcccgttctaatccatactatgttgttcag
caaggaaagattgcatcccttaccctaatgaaagattccgaacgactggatcttctcaaa
gagattggtggtacacgcgtttatgaggatagacggcgcgagagcttgaaaataatgcaa
gaaacagccaacaaaaggaagcagattgatcaagttgtccactacttggaggaaagacta
agagaacttgatgaagagaaagaagaactaaagaagtaccagcagctggacaaacaaaga
agatcgcttgagtatactatattggaccatgaactaaatgatgcaaggaacgagttagct
tcgatggatgataaccgacggaaaatttctgaaaggatgtcccatgcggacaatgaagtg
gtagatgtacgtgagaagataaaaagtttcgataaagaaataaaagtttctactaaaggg
ataaatgacaccaagggacagaaggaagatgttgagaagaggcgtactgaagcgctcaag
gtagttgctcagattgaacttgacttgagagatataaaagacagaatctcaagtgagaaa
cgagcaaaggatgaagcagctagggatttacatagtgtgaggagagagagtgaaaagtca
aagtctgaattggctgaaattagtaaggtgcatcaggccaagttgaaggaagaggaggag
atatcaaagagcataatggatcgtgagaagcggctaagtatattgtaccaaaagcaaggg
agggcaacccagtttgcaaacaaagctgccagagataagtggcttcaaaaggaaattgaa
gatcttgagcctgtacttttatcaagtagaaagcaggaaggtttacttcaagaagaaatt
cagaaacttaaagatgaaattaataatttgacaaactacattgagtctcggaaaaacgat
tcaactaagttagaggctgcacttgcaaaaaaacacaatgactacaatgacctgaggaag
cagagagatatgcttcaagaagaaagaaaatcattttggaaggaggaatctgacgtgaca
gctgaaatcgataggctaagggaagatcttatgaagtcacagaagagcttggaccatgca
acgcctggggatatcaggagaggcctgcattctgttagcagaattatcaaggaccatggt
attaaaggagtttttggtcctgtattagaactggttgactgcgaagagaagttcttcaca
gctgttgaggtcactgctgcgaatagcttgttccatgtcgttgtcgaaaatgatgacata
tcaacgaggatcattcaattattgactcgagaaaaaggtggaagggtgacattcatacca
ctgaacagagtgaaagttcctgatgtcagttgtccacaaagttctgattttgtcccattg
ttgaagaaactgaaatatcgtgctgatcatcgtcgtgctttcgaacaagtttttggcagg
acagtcatatgccgagacctggaaactgcgaccagagttgcacgtagccatggtctagat
tgcattacacttgatggtgatcaagttgccagaaaaggtggtatgacaggaggtttctat
gactctagacgttcgaaactaaagttcgtgaaaataatcagggataataagacagcaatt
gagaaaaagacagttcatctagagaatgtcggaaacaagctaaaagatatagacaagaaa
attacagatttagttaccaaacagcagcaaatggatgctgaacgtgatcatgccaagtcg
gagttggaacaatttcgggttgacattgctagcgcaatgaaacaaaaggggtcgattgag
aaggcccttggaaagaaggaaaaatcacttgacaacatccgcaaccaaattgagcaaatc
caatctagcattgcaatgaaaaatgacgaaatgggcacagaacttattgatcagctaact
ccagaagaaagagatctcctttcgcgattgaatcctgaaattaccgaattaaaggagaag
tttctattgtgtaaaaacagtcggattgagattgaaacaagaaaggaagaattggagacc
aatctatcaactaatcttatcagacgccaaaaggagctagaagcaataatttcatctgca
gattctagaaccttgcctatggaagctgaatcaaaagagcaagaattgaaaagttctaag
aggaatcttgacgagttaacctcgttattaaaggctaatgttgatgctataaataacttt
agtagaaagatggatgaactgaaaagacaaagggatgatctgaagactcttgaggccagt
ttggagcagactgtgcaagatggggccaaagacttggaacagttgatgaacagcaggagc
atccatctagccaagcaagaggagtgcatgaagaagatccgagacttgggctcattgcct
gctgatgcttttgaagcgtacaagatgaaaaacaagaaacagctgcaaaagatactttat
gagtgcaatgagcaattgaagcagtttagtcatgtcaaccaaaaggctcttgaccagtat
gtgaacttcaccgaacaacgtgaacaactgcagagaagacgagctgaacttgatgctggt
gatcagaaaattagggaactcatatcagttttagaccaaaggaaggatgaatcaattgag
cgcacatttaaaggagttgcaaggcacttccgcgaagtgttctctgagctagtgcaaggt
ggtcatggatatttggttatgatgaagaaaaaggatggtgatgcaggtgatgatgataat
gatgaggatggacctcgtgaaccagatcccgaagggaggatagagaagtatattggcgtg
aaagtcaaggtttcctttactggcaagggagaaactcaatctatgaaacagttgtcggga
ggacaaaagactgtggtggcattaacactgatttttgctatccaaagatgtgatccagct
ccattttatctcttcgatgagatcgatgctgctctggatccacagtacagaacagctgtc
gggaatatgatccgccgtctagctgacatggctgacactcaattcattgcaaccacattc
cggccagagattgtaaaagttgctgataaaatatatggtgtgacacacaagaatagagtg
agcttcatcaacgtggtatcgaaggagcaggctctggacttcattgagcatgaccagacg
cacaatgccagctga
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