Phragmites australis (common reed): 133906960
Help
Entry
133906960 CDS
T10575
Name
(RefSeq) cell division control protein 48 homolog E-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
paua Phragmites australis (common reed)
Pathway
paua04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133906960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133906960
03009 Ribosome biogenesis [BR:
paua03009
]
133906960
04131 Membrane trafficking [BR:
paua04131
]
133906960
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
paua04147
]
133906960
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
133906960
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
133906960
Membrane trafficking [BR:
paua04131
]
SNARE
SNARE associated proteins
Others
133906960
Autophagy
Aggrephagy
Other aggrephagy associated proteins
133906960
Exosome [BR:
paua04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133906960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
CDC48_2
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_17
ATPase_2
AAA_18
Parvo_NS1
Viral_helicase1
Vps4_C
IstB_IS21
ABC_tran
AAA_7
NACHT
NB-ARC
AAA_lid_PRS2_C
TsaE
DUF815
AAA_24
ResIII
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
133906960
NCBI-ProteinID:
XP_062204911
LinkDB
All DBs
Position
24:complement(7515940..7520778)
Genome browser
AA seq
811 aa
AA seq
DB search
MASQGEPSASASDPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLF
RGDTVLLKGKKRKDTICIVLADETCEEPKVRMNKVVRQNLRVRLGDVVSVHQCQDVKYGK
RVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPTE
YCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSI
GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA
EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSI
DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLELIAKDTHGYVGADLAA
LCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPN
VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN
ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA
GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSR
LQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRSCKYAIRENIEKDIERERRR
KDNPEAMEEDEVDEIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFR
FSEQSTTAGAGAAADPFVSAGAAADDDDLYS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccaaggggagccatcggcctccgcttccgatccgaaggggaaaaaggactac
tcgacggcgatcctggagcggaagaagtcgccgaaccggctggtcgtcgatgaggccacc
aacgacgacaactccgtcgtcgcgctgcacccggacaccatggagaggctgcagctcttc
cgcggcgacaccgtgctcctcaagggtaagaagaggaaagacactatttgcattgtcctt
gcggatgaaacgtgtgaggagccaaaggttcggatgaacaaggttgtccggcagaacctg
agggtgcgacttggtgatgtggtttccgtccaccagtgccaggatgtgaaatatgggaag
cgtgtacacatccttccaattgatgatacagttgagggcattacagggaatctgtttgat
gccttcttgaaaccatatttcctagaagcataccggcccctgaggaaaggagaccttttc
cttgttagaggtgggatgagaagtgtggagttcaaagtgatagagaccgatcctactgag
tattgcattgttgcaccggatacagaaatattttgtgatggggagcctattaagagggag
gatgaggaacggctcgacgaagttggttatgatgacgttggtggagttagaaagcaaatg
gcccaaatcagggagcttgtcgaacttcctttgcgccatcctcagcttttcaaatccatt
ggtgtgaagccaccaaagggcatattgctgtatggaccacctgggtctggaaagaccctt
attgctcgtgcagttgcaaatgagacaggagcctttttctttctgattaatggcccagag
attatgtcaaagcttgcaggagagagtgagagcaatctcagaaaggcatttgaagaagca
gaaaagaatgctccatctatcatttttattgatgaaattgattccattgctcctaagaga
gagaagaccaatggagaagtggagcgccgtattgtttcacagcttttgacccttatggat
ggactcaaagctcgttcccatgttattgttatgggtgctacgaaccgaccgaacagcatt
gatcctgctcttcgtaggtttggaaggtttgaccgggaaattgacattggggttcctgat
gaagttgggcggcttgaggttctccgcattcacacaaagaacatgaaacttgctgaagat
gttaatttggaactcattgccaaggacacccatggatatgttggtgctgatcttgctgcc
ctttgcactgaggctgctctccaatgcattcgtgagaagatggatatcatagatctcgag
gatgagactatagatgctgagatattaaactcaatggctgttacaaatgaccacttcaaa
actgcacttgggacaagcaacccatctgcacttcgtgaaactgttgttgaagttccaaat
gtctcttgggaggatattggtgggttggagaatgtcaagagggagctccaggagaccgtt
caatatccggtagaacacccggagaaatttgagaagttcggtatgtccccatccaaagga
gttctgttctatggcccacctggttgtggtaaaactttgttggccaaggcaattgcgaac
gagtgccaggctaacttcatcagtgtcaaaggtccggaactgcttaccatgtggtttggt
gagagtgaagccaacgttcgtgagatttttgacaaggcccgccagtctgcaccttgtgtc
ctcttttttgatgagcttgactccattgctactcagagaggaagcagcgtaggtgatgct
ggaggtgccgctgatagagtgctgaatcagttgctgacagagatggatggcatgaatgcc
aagaaaactgtgttcattattggggctacaaacaggcctgacatcatagacccagctttg
cttaggccagggcgtcttgatcagctgatttatattccactgcctgatgagcagtctagg
ctccaaatcttcaaagcctgccttaggaagtcacctgtggcgaaggatgtggacttgaat
gctcttgctaaatacacccaagggttcagtggtgcagatattactgaaatttgccagcgt
tcatgcaaatatgctatcagagagaacattgagaaggacattgagagggagagacggaga
aaggacaaccctgaagccatggaggaagacgaggtggatgagattgcggagatcaaggca
gctcacttcgaggagtcgatgaagtacgcccgccggagtgtcagcgacgcagacatccgc
aagtaccaggcgtttgcccagaccttgcagcagtcccgcgggttcggcagcgagttccgc
ttctcggagcagtctacaactgccggtgctggagctgccgccgatcccttcgtgtctgct
ggtgcagccgccgatgatgacgacttatacagttag
DBGET
integrated database retrieval system
