Phragmites australis (common reed): 133907116
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Entry
133907116 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133907116
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133907116
mRNA degradation factors
5'-3' decay
Decapping complex
133907116
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133907116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133907116
NCBI-ProteinID:
XP_062205127
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All DBs
Position
24:4001392..4005879
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AA seq
514 aa
AA seq
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MHQPRGRYPPGYGSGGGGGGGGNGGGGGGGGENHNYYGRNPQTQQQHHYQQQQQHAHRDA
SHQQEQHAHRNASHQQQQQQLWLRRDQAAAAAAASGDAAARTASQFDAVDSSSQEWKAQL
NIPAPDTRYRTEDVTATKGNEFEDYFLKRELLMAIYEKGFERPSPIQEESIPIALTGSDI
LARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVM
VSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICMLNDCSILVMDEADKLLAPEFQ
PSVEQVIHFLPANRQLLMFSATFPVAVKAFKEKYLPRPYVINLMDELTLKGITQYYAFVE
ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF
HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNL
ITYEDRFNLYRIEQELGTEIKTIPPQIDLSVYCQ
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcccagaggccgctaccctcctggctacggctccggcgggggcggcggcgga
ggcggcaacggaggaggaggaggaggcgggggtgagaaccacaactactacggccggaac
ccgcagacgcagcagcagcaccactaccagcagcagcagcagcacgcgcatagggacgcc
tcgcatcagcaggagcagcacgcgcataggaacgcctcgcatcagcagcagcaacagcag
ttgtggctgcggcgagaccaggccgccgccgcggcagcggcgtccggagacgctgcagcg
agaacagcgtctcagttcgacgccgtggactcgagttctcaagaatggaaagcgcaatta
aatataccagctccagatacacgctataggacagaggatgtcaccgcaacaaaaggcaat
gagtttgaagattattttttgaaacgtgaactgcttatggcaatttacgaaaaaggattt
gaaaggccatctccaattcaagaagaaagcattccaattgctcttactggaagtgatatt
cttgcaagggcgaaaaatggcactggaaagactgctgcattttgcattccagcacttgaa
aaaattgaccctgagaaaaatgccatacaagttgttatattggtaccaacaagggaactg
gccctgcagacttcacaagtctgcaaagagcttgggaagtacctgaatattcaagttatg
gtcagtactggaggaactagcttgaaggatgacatcatgcgtttataccaacctgttcat
ttactcgttgggacacctggccggatactggatcttaccaggaagggcatttgcatgctg
aatgattgttcaatcctcgtcatggatgaggcagacaagctattagctccagagttccag
ccttctgtggagcaagttattcatttccttccagctaatcggcagctattgatgttttca
gcaacctttcctgtagctgtcaaggcattcaaagagaaatatctgcctagaccttatgtt
attaatcttatggatgaacttacactgaaaggaataacacaatactatgcatttgtggaa
gaaagacagaaggttcattgtctgaatacacttttctcaaagcttcaaatcaatcaatcc
attattttctgcaactctgttaatagagttgagttactggctaagaaaataactgagctt
ggttattcgtgcttctacattcatgctaagatgctgcaagaccatagaaacagagtgttt
catgattttcgcaatggcgcttgcagaaaccttgtgtgcacagatctgtttaccagaggc
attgacatccaagctgttaatgtggtcattaactttgacttcccaaagacctcagagaca
tatttgcacagggttggtcggtctgggaggtatggacaccttggtttggcagtgaactta
atcacttatgaggaccgtttcaacttgtataggattgagcaagaacttgggacagaaatt
aagacaatacccccacagattgacctgtctgtatattgccaatga
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