Phragmites australis (common reed): 133907126
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Entry
133907126 CDS
T10575
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133907126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133907126
03012 Translation factors [BR:
paua03012
]
133907126
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133907126
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133907126
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133907126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
Cas3-like_C_2
NACHT
Nop5_56-rel_N_Arc
Motif
Other DBs
NCBI-GeneID:
133907126
NCBI-ProteinID:
XP_062205140
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All DBs
Position
24:5978458..5988041
Genome browser
AA seq
1034 aa
AA seq
DB search
MLLHSSTCRGSLLSRSSGRFPSFAFVAVPLKTQGALRNLAAMSYRGGRGGGGPNSHRGRG
RGGGGGGGRGGRGGGGGGGRGEQRWWDPQWRAERLRQMHGEVEKVNENEWWNKIGQLREG
PQQELVVKRNFGRDGQNILADMAQRQGFYFNAYNKGKTLVFSKVPLPDYRADLDERHGST
QKEIIMSNQIEKRVEDLLSRSKSNTKDSASTSTISLRQSLPSTSSSVVEPALNIDKEKLS
SQLRDLQNSRKMTASARSMESFREKLPAFNMREGFLRAVADNQVLVISGETGCGKTTQLP
QFILEEEIDSLRGADCSIICTQPRRISAISVAARVASERGEDLGETVGYQIRLESKRSPQ
TRLLFCTTGVLLRRLVQEPDLVGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVL
MSATINAELFSKYFGDAPIMHIPGFTFPVAELFLEDVLEKTRYKINSERDNFAGSSRRKR
FSSVKNDPLSDVFEDIDFNKEYGNYSITTRQSLEAWSAAELDLSLVESTIEYICRHEAEG
AILVFLTGWDEISKLLDKIKVNNFLGTSDKCLVLPLHGSMPTVNQREIFDRPPANKRKIV
LATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GCCYRLYPKVIHDAMPQFQLPEILRTPLQELCLNIKSLQLGAVSSFLAKSLQPPDPLSVT
NAIELLKTIGALDDKEELTSLGRHLCTLPLDPNIGKMLLMGSVFQCLDPVLTIAAALAYR
NPFVLPIDRKEEADAVKRSFAGDSCSDHIALLKAFVAWKEAKQSGRERSFCWENFLSPMT
LKMMDDMRNQFFDLLSDIGFVSKTRGVKAYNHYGSDLEMVCAVLCAGLYPNVVQCKRRGK
RTAFYTKDVGKVDIHPSSVNAFVNQFPLPYLVYSEKVKTASIYVRDSTNISDYALLLFGG
SLSLSTTGEGIEMLGGYLHFSAPKRIIELIQRLRGELDKLLQRKIEEPALDIFSEGKGVV
AAAVELLHSQNVYH
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgctcctccactcgtccacctgccgcggtagcctcctctcccgcagcagcggccgcttc
ccttccttcgcgttcgtagccgtccccctcaaaacccaaggggcgctcaggaacctcgcc
gccatgtcctaccgcggcgggcgcgggggcggcgggcccaactcgcaccgcgggcgcggg
cgcggcggcggcggcggcggaggcaggggaggccgcggcgggggcgggggagggggacgt
ggggagcagaggtggtgggacccgcagtggcgcgccgagcggctccggcagatgcatggg
gaggtggaaaaggtcaatgagaatgaatggtggaataagatcgggcaattaagagaaggg
cctcagcaggagctagtagtcaagcggaattttggacgagatgggcagaacatacttgca
gacatggctcaaagacaagggttttactttaatgcatacaacaaagggaagacacttgtt
ttcagcaaagttccattacctgattatcgggcagatcttgatgagaggcatggatcaaca
caaaaagagattatcatgtctaatcagatagagaagcgagtggaagaccttttgtccagg
tcaaagtcgaatactaaagattctgcaagcacatctacaatctcattaagacaatctttg
cctagcacatcctcgtcagtagttgaaccagcattaaatattgataaagaaaagctcagt
tctcagcttagggatttgcagaattcaaggaagatgacagcaagtgctagatcaatggaa
tctttcagggagaaattacctgcattcaacatgagagaggggtttctgagagcagtagca
gacaatcaggttctggtcatttctggtgagacaggctgtggcaaaacaacccagcttcca
cagttcatattagaagaagagatagatagcctccgtggtgctgattgcagcataatctgt
actcagccccgccgtatatctgccatatcagttgcagcaagagtagcttctgagaggggt
gaagatcttggtgagactgttggataccagattcgccttgaatcaaaacggtcaccacaa
acacgactgctgttctgcactacaggagttttacttagaagactggttcaagagccagat
ttagttggtgtaagtcatttactggttgatgaaattcatgaacgtggcatgaacgaagat
tttctcatcataatactgcgtgaccttctaccaagacgtccagaccttcgccttgtattg
atgagtgcaaccataaatgctgaacttttttccaaatacttcggagatgctccaataatg
cacatcccggggttcacttttcctgttgctgagttgttcctggaagacgttttagaaaag
actcgatacaagatcaattctgaacgtgataattttgctggtagttcgaggagaaagagg
ttttcatcagttaagaatgatccattatctgatgtctttgaggacattgactttaataag
gaatatggaaattacagcattacaacaaggcagtcccttgaagcttggtctgctgctgaa
ctagatttgagccttgtggaaagtacaattgagtatatttgtcgtcatgaagcggaaggt
gcaatccttgtgttccttactggctgggatgaaatttcaaaacttctggacaagattaaa
gtgaataatttccttggcacttctgataaatgccttgttcttcctttgcacggttctatg
ccaactgtcaatcagcgtgaaatttttgacagaccaccagctaataagaggaaaattgtt
ctggcaaccaatattgcagagagtagtattactatagatgatgttgtctatgtaattgat
tgtggtaaggccaaggagacaagctatgatgccttgaataaacttgcgtgccttctaccg
tcgtggatatcaaaagcctctgcccaccagaggcgaggtcgtgcaggtcgcgttcagcca
ggttgttgctataggctttaccccaaagtcattcatgatgcaatgccacagtttcagttg
cctgaaattcttaggactcctttgcaagaactatgccttaatatcaaaagcttacagctt
ggagcagtatcctcttttttagccaagtcactgcagccaccagatccactttctgtcacg
aatgcaattgagctgcttaaaaccattggagcactggatgataaggaggaactcacttct
ctaggacgacatctctgtacgcttccactggacccaaacattgggaaaatgctgcttatg
ggatctgtattccagtgcctggatccagtattaacaattgctgctgcccttgcatatcgt
aatccatttgtgctcccaatagatagaaaagaagaagctgatgctgtcaaaagatcattt
gctggtgactcctgcagcgatcacattgctcttcttaaggcatttgtggcatggaaggaa
gcaaagcagagtggtagagaacgttctttctgttgggaaaattttctgtcccccatgacc
ctgaagatgatggacgacatgcgaaatcaattttttgatctactatctgatattggattt
gttagcaagacaagaggggtgaaggcatataaccactatggtagtgatctggagatggtt
tgtgctgtcttgtgcgctgggctttacccaaatgtcgtacaatgcaaaaggcgaggcaag
aggacagctttctataccaaagacgtgggaaaagtggacattcacccatcatcagtcaat
gcgtttgtgaatcaattcccattgccttacttggtttatagtgagaaggtgaagacggct
agcatttatgttagggactcaacaaatatatcagactacgcccttttactttttggtggt
tcccttagtctgagcacaactggagaaggcatcgagatgctcgggggttatcttcatttc
tcggccccaaagcgtatcatagagttgattcagagattaagaggtgagttggataaactc
ctccagagaaagattgaggaacctgcacttgacatcttttcagaagggaagggtgtcgtg
gcagcagctgtagaactgttgcacagtcaaaatgtttaccactag
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