KEGG   Phragmites australis (common reed): 133907220
Entry
133907220         CDS       T10575                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
paua  Phragmites australis (common reed)
Pathway
paua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133907220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133907220
   03041 Spliceosome [BR:paua03041]
    133907220
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     133907220
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     133907220
Spliceosome [BR:paua03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    133907220
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 133907220
NCBI-ProteinID: XP_062205216
LinkDB
Position
2:complement(28349051..28354918)
AA seq 449 aa
MDHFSKKRKPDENGAPAASPASGAAALGLTRDDVLRLLEPLSRDQLADIAAAAALVSAAA
LDAVRAAADRDPALRKLFVRGLGWETTSDSLSAIFSAYGDLEEAVVITDKSTGRSKGYGF
VTFRHADSAVLALKEPSKKIDGRMTVTQLAAAGAAGGPSGGAAGSGGAPVADVSLRKIFV
GNVPADMPSERLLAHFAAYGEIEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKV
IDGHQLVCKLAIEGKKGKQGQPQQSGPASQQQQQMLQGGPQDMPGSGLGGSQMGAQYGGP
GSGMSSFGAFGGVGGGFGGPNPYGNLPSSMGGGGAGAGLGSLGGQMPGGLGAAGAGAYGA
GGLGGGSFRGSSQFGAPGMGAYGGLGMGGASSMYRMQQGAGGLPSGGYGDGGNYPLPGAG
FRGQDPQAGMSPGPVGRVPPMYPNVPPYF
NT seq 1350 nt   +upstreamnt  +downstreamnt
atggatcacttctccaagaagcgcaagcctgacgagaacggcgcgcccgccgcctccccc
gccagcggggccgccgcgctgggcctcacccgcgacgacgtcctccgcctcctcgagccg
ctctcccgggaccagctcgccgatatcgccgcggccgcggcgctcgtctcggccgcggcg
ctcgatgccgtgcgcgccgccgccgaccgcgaccccgcgctccgcaagctcttcgtgcgc
ggcctcgggtgggagaccacctccgattcgctcagcgccatcttctccgcctacggcgac
ctcgaggaggctgtcgtcatcaccgacaagtccaccggccggtccaaggggtacgggttc
gtcaccttccgccacgccgactctgccgtcctcgccctcaaagagccgtccaagaagatc
gacggacgcatgaccgtcacgcagctcgccgccgccggtgcggccggcgggccgtccggt
ggggccgcgggcagtggcggcgctcctgtggcggatgtgtccctccggaagatctttgtc
gggaacgtgcccgctgacatgccgtcagagcgcctacttgcgcacttcgcggcgtatggc
gagattgaggaggggccgctggggttcgacaagcagacgggcaagttccgcggctttgcg
ctcttcgtgtacaagacccctgagggtgcgcaggcctcgctagtggactcggtgaaggtg
attgacggccaccagctcgtatgcaagcttgcgatagaggggaagaaggggaagcagggg
caaccacagcaatctgggcctgccagccagcagcagcagcagatgctacagggtggcccg
caggacatgccgggttctgggcttggcgggtcacagatgggagcgcagtatggtggtcct
gggagtggtatgtcatcgtttggtgcatttggtggtgttggcggcgggtttgggggtcca
aacccatatggtaacctgccatcttccatgggtggaggtggcgcaggtgctggtttaggg
tcgttgggaggccagatgcctggcgggttgggtgctgctggggctggcgcatatggggct
gggggattgggtggaggttcttttaggggatcatctcaatttggtgctcctgggatgggg
gcttatggcggcctaggaatgggcggggcatcttccatgtaccgcatgcaacagggggcg
ggtggactgccttcaggtggctatggtgatggcgggaactatcctcttccaggggctggt
tttcgaggtcaggaccctcaagctgggatgtcacctggaccagttggcagagttcctcca
atgtaccccaatgtgccaccttatttctaa

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