Phragmites australis (common reed): 133907318
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Entry
133907318 CDS
T10575
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3b-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
paua Phragmites australis (common reed)
Brite
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133907318
microRNA pathway
RISC loading complex
133907318
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133907318
NCBI-ProteinID:
XP_062205319
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Position
24:complement(4894008..4906649)
Genome browser
AA seq
1646 aa
AA seq
DB search
MRFPTTAASPAPNPSPTAPMAASMAEDADPPPPPPPPLPPPRRPHKQLQPRGYQVEVFAA
ALRGNTIAVLNTGSGKTMVAVMLAREHARRSRAGEAPRRIVVFLAPTVHLVHQQFEVIRE
YTDLDAVECHGASGVGEWSAEHWKEEIGSKEIVVMTPQILLDALRHAFLTMSAMNLLIFD
ECHRACGNHPYSRIMKEFYIGSEWRPAVFGMTASPVATKGASTIEDCEAQIAQLELILDA
KVYFVEGRNELESFAPGATIVNKYYDAYLIDFDDLESKLQILFEEFDALLVSLQESSPNK
YEDTDSILEMSRKTLSRYHGKILYGLNTLGPIVTLEVVKIYNESIKTVGDSEDCLFSKAS
LNLQVSYFKEALGLIEEILPQGYEDIMKSESGSAELTKRGYISSKVETLINIFKSFGSSE
EVLCLIFVERIMTAKAVERFMRGIVNISRFSISYLTGGSTSKDALSPAVQRFTLDLFRSG
KVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVCSYVQSRGRARRSSSTYVLMIERGNLVQ
QEHIFRIIRTEYYVKNFALHKQPSTPSYDLPLQVNYTYHVDSTGATITADCCVNLIYKYC
EKLPKDRYYMPKPSFEVGLKDGSYQCTLTMPPNAAFRSIVGPSSSTCNLAKQLVSLEACK
KLHKLGELSDHLVPLIEEPMNIDTTIKDKKCLSGPGTTKRKELHGTINVQGLSGNWIHES
GTVTLNPYKFDFLCDQEGENYAGFVLLMESVLDDDVAHSEIDLFLIPNKIVYTTITPCGK
IQLNKEQLHKGKLFQEFFFNGIFGRLFHGSRTSGLQREFLFRKGYEIQWSSDNMYLLLPL
RHSSHIRHDLNINWEAIESCSGAVEQLRNLYLEDGNLDYGKLIPHKRNKGEDIIHLANKS
LHFSSVKDSVVLSLHTGRIYSVLDLIFDTTADDSFDEMYNGKASPFSSFVDYYHQKYGIV
IQHPGQPLLLLKQSHHAHNLLFSKLKYQDGSTGNPLLVGKKQIHARVPPELLIHIDVTTD
VLKSFYLLPSVMHRLQSLMLASQLRRDIGYTQCVPSSLILEAITTLRCCETFSLERLELL
GDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNATLHKHGIWRSLQGYVRDSAFDTRR
WVAPGQISLRPFPCRCGIETAFVPVDGRYIRDDPSFVVGKPCDRGHRWMCSKTVPDCVEA
LVGAYYIGGGIAGALWVMRWFGIDIRCDMQLVQEVKSNAYHLCYLSKLNDIEELEAKLKY
SFSVKSLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLITRHLYVTHTDIDPGELTDL
RSALVSNDNFAQAVVRNNIHNHLQHGSGILLEQITEYVKSNLECHGKENEFLQHATCKVP
KVLGDIMESITGAIFIDTNFNVDLVWKIVEPLLSPMITPDKLALPPYRELLELCSHLGCF
INSKCTGEGEELIIEMTVQLRDELLIAQGHDRKKKSAKAKAAAHILADLKKRGLSIKQCF
SKAKQLDIVSELQFQLTSLEPQIDYPDVNGSHSLEALSSVREAVVLPLKMDKGGPRTALF
RLCKSLQWPMPEFEFVEQRFRTPISLDGVTTTNFNSFVSTITLHIPDVTVITLQGERRTD
KKSSQDSASLIMLQKLQELKVCICKT
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttccccaccacagcggcttcacccgcgccgaaccctagtcccaccgcccccatg
gccgcatccatggccgaggacgccgacccgcctcccccgcccccgccgccgctgccgcct
cctcgccgcccgcacaagcagctccagccgcgggggtaccaggtggaggtgttcgcggcg
gcgctgcggggcaacaccatcgcggtgctcaacaccggatcggggaagaccatggtcgcc
gtcatgctcgcgcgagagcacgcgcgccgctcgcgcgcaggggaggcgccgcgccggatc
gtggtgttcctcgcgcccaccgtgcacctcgtccaccagcaattcgaggtgattcgggag
tacacggacctcgacgcggtggagtgccatggggcatcgggggtcggcgagtggagcgct
gagcattggaaggaggaaattgggagtaaggagattgttgttatgacgccacagatattg
ttggacgctctgaggcatgcttttctaacaatgagtgcgatgaacttgctaatatttgat
gaatgtcatcgtgcctgtggaaaccatccctactcacgaataatgaaggaattttacatt
ggttctgagtggaggccagctgtatttggaatgacggcatctccagttgctacaaaagga
gcttctacaatagaagattgtgaagcacagattgctcaacttgaactaatattggatgcc
aaggtatatttcgtagaaggtaggaatgaacttgagagcttcgcccctggtgcaacaatt
gtgaataaatactatgatgcttacttgattgattttgatgatctggaatcaaagttacag
atcttgttcgaggagtttgatgctttgttggttagtctacaagaatcatcacctaataaa
tatgaagacactgatagtatattggagatgtcaagaaagaccttgtccagataccatggg
aagatattgtacggactaaatactcttggtccaattgttaccttggaggtggtgaaaata
tataacgaaagcattaagacagtaggtgattccgaagactgcctcttttctaaagctagc
ttgaacttacaggtgtcctattttaaagaagctttaggtttgatagaggaaattttgcca
cagggttatgaggatataatgaaatcagaatctggttctgcggaactaactaagagggga
tatatttcttctaaagtggagacactgatcaatattttcaaatcatttggctcatcagag
gaagtgctttgcctgatttttgtagaaagaattatgacagccaaagctgttgaaaggttt
atgagaggaattgtaaacatctctcgtttttcaatttcttacttgactggagggagtaca
tcaaaagatgctttgagcccagcagtgcagagatttactttggatttgttccgatctggg
aaggtgaatttgcttttcacaacagatgtgactgaagagggcattgatgtacctaactgt
tcttgtgtgatacgcttcgacctacccagaactgtttgtagctatgtccagtctcgtggg
cgtgccagaagaagcagttcaacttatgttcttatgattgagagggggaacttggtgcag
caggaacacatatttcgtataatacgaactgaatactatgttaaaaactttgcactgcat
aaacagccgagtactccatcatatgatttgcctctccaagtgaattacacataccatgtc
gactcaacaggagcgactatcacggcagactgctgtgtcaatctaatttataaatactgt
gagaagcttcctaaagataggtattacatgccaaagccttcctttgaggtgggtctcaaa
gatgggtcatatcaatgtaccttgacaatgcctcccaatgctgcttttcgaagtatagtt
ggtccttcaagcagtacatgtaatttagccaagcagcttgtatccctggaggcatgcaag
aaattacataagctgggagaactcagtgatcatctagtacccttgattgaagagcctatg
aatattgatacaactataaaagataaaaaatgtctttctggaccaggaacaactaaacga
aaggagcttcatggaacaataaacgttcaaggtctatcaggaaattggatccatgaaagt
ggaactgtcactctgaatccttataaatttgattttctctgtgaccaagaaggtgaaaac
tatgctgggttcgttctcttaatggaatcagtacttgacgatgatgtggcacattcagaa
atagatctcttccttatccctaataaaatagtctacaccaccataactccttgtggaaaa
attcaactaaacaaagagcagctgcataaagggaagttatttcaagaattcttcttcaat
ggtatatttggtagattatttcatggttcccgaacgagtggactgcaaagggaatttctt
ttcagaaaaggctatgaaatacaatggagctcggacaacatgtacttacttttgcctttg
aggcattcctcacatatccggcatgatctaaacataaactgggaagccatcgaatcctgc
tctggagcagttgaacagttgagaaatttgtatctagaagatggaaatcttgattatgga
aagttaattccacataaaagaaacaagggagaagacatcattcatctggcgaataaatct
cttcatttttccagcgtcaaagattcagtcgtgctatctcttcatactgggaggatatat
tctgttcttgacttgatttttgacacaactgcagacgactcatttgatgagatgtataat
gggaaagcttcaccattttcttcattcgtggactactaccatcaaaagtatggtattgtt
attcaacatccaggacaacctttgttgctgttaaagcaaagccaccatgcacacaatcta
cttttttcaaaattgaagtaccaagatggttctactggcaatcctctgctcgtgggaaaa
aaacaaattcatgcccgggtcccacctgaactactcatccacattgatgtcacaaccgat
gttctcaaatcattttatttactcccttctgtaatgcatcggcttcagtctctcatgcta
gccagccaacttcgcagagatattggttacactcaatgcgtaccaagtagtctgattttg
gaagctatcacaactttaaggtgctgtgagacattttctctagagcggttagagttatta
ggagactcagtactgaaatatgtaataggatgtgacttgttcctgagatatccaatgaaa
catgaaggtcatctttctgatatgagatccaaggccgtatgcaatgccacacttcataaa
catggaatatggcgatccttgcagggttatgtacgtgatagtgcatttgacacacgtcgt
tgggtcgctcctggacagatatcgttgcgcccttttccttgtagatgtggaatcgagact
gcatttgttcctgttgatggaagatatatcagagacgatccatcttttgttgtaggaaaa
ccatgtgacagaggtcacagatggatgtgctcaaaaacagtacctgattgtgttgaagca
ctagttggagcatattatattggtggtggcattgctggtgcactttgggttatgcggtgg
tttggtattgatatcagatgtgatatgcaattagtgcaggaagtgaaatctaatgcatat
catctgtgctatctatcaaaattaaatgatattgaggaactggaggcaaaactgaagtac
agcttctcagtgaagagcctcctgcttgaagccataactcatccatctctgcaagaatta
ggggtcgactactgttaccagcggctggaatttcttggtgattctgtcctggatttacta
atcacacggcatctctatgttacccacactgatattgatcctggagaattaacagactta
cgttctgctttggttagtaatgacaattttgcacaagcagttgtaagaaacaacattcat
aatcatctacagcatggatctggaatacttttggagcaaataacagaatatgttaagtcc
aatttggagtgccatgggaaagagaatgaattcctccaacatgctacatgcaaagtaccc
aaggttcttggagacattatggaaagtattaccggtgcaatatttatagacacaaatttt
aatgttgatctggtttggaagattgttgaaccgttgctctctccgatgattacccctgat
aagcttgcgttgccaccttaccgtgagttgctggagttatgtagtcaccttggttgcttc
ataaattcaaaatgtactggtgaaggagaagaattaattatagagatgacggtgcaatta
cgagatgaactgctgatagcccaaggacatgacagaaaaaagaagagtgcaaaggcaaag
gcagcagcccatattttggccgatctgaagaaacggggtctttcaattaaacaatgtttc
tctaaggctaagcagttggatattgtttcagaactgcaatttcaattgacaagcttggaa
ccccaaattgattatcctgatgtgaatggcagtcatagcctagaagctctttcctcggtg
agagaagcagttgttcttcctctcaaaatggataaaggtggaccccggactgctcttttt
aggctatgcaagagtttgcagtggccaatgccggaatttgaatttgtggaacaaaggttt
aggactcctatttctcttgatggcgttacaactacaaactttaatagctttgtttcaacc
atcaccctgcacatacctgatgtgacagtcattacacttcaaggtgagcgacgaaccgac
aaaaagagctctcaagattcagcatcgttgataatgcttcagaaacttcaagaactcaag
gtctgcatatgcaagacgtag
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integrated database retrieval system
