Phragmites australis (common reed): 133907408
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Entry
133907408 CDS
T10575
Name
(RefSeq) protein CHROMATIN REMODELING 20
KO
K10779
transcriptional regulator ATRX
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133907408
03036 Chromosome and associated proteins [BR:
paua03036
]
133907408
Transcription factors [BR:
paua03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
133907408
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
133907408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
133907408
NCBI-ProteinID:
XP_062205430
LinkDB
All DBs
Position
24:complement(6584886..6600295)
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AA seq
1494 aa
AA seq
DB search
MDKNGILSDGKLKKMESVPPNGQLEDDDVMITESEWDETKAGAKSSIRDGLFKEHKEPEC
GTMYDGVHEEVSITDDVSETDSYEFFLRESDNEPASASEEDIEVPLTEEEVEELVAEFLD
VESKAAEAQESLEKESLDKIETEVRLELSERLQGDELESAVSTEMEQFRKQWEIELDDLE
IHSSILLEQLDAAGIELPRLFKSIESQVPNVCETEAWKSRTHWAGSQVPEEANQSIKKAD
KYLQSCRPVRRKHGRLLEEGASGFLAGKVPVGNDDSIQCHEKSWSSFNELIKSKESAENS
FGSSNWASVYLASTPQEAASLGLQFPGVDEVEEISEVDSVFADIKGVDEIELSEEQKRKY
RKVREEDDAKIMKCLQRRLKGRRTRGCKEDFGSVSSSNGCYEKPPPSKNDVLGATNGLPS
SEKLKTDENEVSIEMLKRTREDDDELDQKRLKTVIIESDDDMQIDGKPALHKDGECSSGE
VEKVVDIIDLDLSPSQSPKLSDKSLSKAFKCTICTEMLNASDVHRHPVLDVTVCGLCRFL
VIEKNRLEDPVSGGYCTWCAQSEQLQSCSSCKLLFCTNCLSKNLGEQCLSEAKVTGWQCC
CCIPSQLELLISECDKALSVESSDPESSNTELSGPENNGPVSKRKMKKRIRRIIDDTELG
EETKRKIAMEKARQDHLKSMQEQSASKLRSENIGTSFGAVSEVSLEDAGDGHIVNLAREE
DEEPVRIPSSMSSKLKPHQVEGIRFMWENVIQSVKKVKSGDKGLGCILAHNMGLGKTFQV
ITFLYTGMRYAQLGLRTALIVTPVNVLHNWRKEFTKWRPAELKPLRVFMLEDVARVKRPY
LLDKWRLKGGVLLIGYSSFRNLSLGKHVKDKNTANDISYALQCGPDILVCDEAHMIKNRR
ADITQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQ
HTNSTSDDVKVMNQRSHILFEQLKGFVQRMGMNVVKNDLPPKKVFVITVKLSQLQRKLYR
RFLDVHGFSSSGYSEKSHSSFFAKYQTLAQVWNHPGLLQMAKEQRGNLRQEDAVENFLMD
ESSSDDNVENSLPNGEKQKDKTDQQSKKSNFVNEEGNWWEDLLDENTYMEADYSGKMILL
LDILSRSSELGDKVLVFSQSLTTLDLVEFYLSKMQTKGKEGKHWKRGKDWYRLDGSTPSS
DRQNLVERFNDPENTRVKCTLISTRAGSLGINLHAANRVVLLDGSWNPTHDLQAIYRVWR
YGQTKPVYAYRLMAHRTMEEKIYKRQVTKEGLAARVVDRQQVSRTISKEEMLHLFEFGDE
ELVEQSENSSTMIDCPKVVTEKPSTSNTIGTSELVPVDRLMLNLLSEHTRWIAGYHEHEA
LLQENEEERLTKEEQDMALSEWEALRKAVRDPDRKSNTTAIPTDSNLVQPPKVTSRSRQP
QQPKVNSSNQKKCNNLTHLLTLRSHGTKAGCTTICKECDQEICWETLNREGRSR
NT seq
4485 nt
NT seq
+upstream
nt +downstream
nt
atggataagaacggaatattatctgatggcaagttaaaaaagatggaatctgttccacca
aatggacagctagaagatgatgatgtaatgattactgaatctgaatgggatgaaactaaa
gctggagcaaaatctagcataagagacggtctctttaaggagcataaggagcctgagtgt
ggaacaatgtatgatggtgtgcatgaagaggtatccattactgatgatgtttcagagacc
gactcatatgaattctttcttcgcgaatcagataatgaaccagcttcagcatctgaagaa
gacattgaggtacccctaactgaggaagaagtcgaagaattggttgctgaattccttgat
gttgagagcaaagcagctgaagcgcaagagtcacttgaaaaggagtcactggacaaaatt
gaaactgaagtaagattggagttatcagagaggcttcaaggagatgagttggaatcagct
gtgtcaactgagatggagcaattcaggaagcagtgggaaattgaacttgatgacctggag
atccatagttctattctgttggaacaacttgatgctgctggaattgaacttcccagactc
tttaagtcaatcgaaagtcaagttccaaatgtttgcgaaactgaagcatggaagagcagg
acccattgggctggttctcaggtgcctgaagaagctaatcaatcaatcaaaaaagctgac
aagtacctccagtcttgcagacctgtaaggagaaaacacggaaggctgctggaggaaggt
gctagtggttttcttgctggaaaagttcctgttgggaatgatgattctattcagtgtcat
gagaaaagttggagttcattcaatgaacttattaaatccaaggagagtgccgaaaatagt
tttggaagcagtaactgggcatcagtttatcttgcaagcaccccccaggaagctgcttcc
ttaggtctccaatttccaggagttgacgaggtggaggagatatctgaagttgatagtgtc
ttcgctgacataaaaggtgttgatgaaatagagctttctgaggaacagaaaaggaaatac
agaaaggtaagggaagaggatgatgcaaaaataatgaagtgcctgcagcgtcgtttgaaa
ggaagaaggacaagagggtgcaaggaggactttggttcggtctcatcatcaaatggatgc
tatgagaagcctcctccatcaaaaaatgatgttttaggtgctacaaatggccttccttca
tctgaaaagctcaaaactgatgaaaacgaagtttctattgagatgttgaagcgcacacgt
gaagatgatgatgagcttgatcagaagaggttgaaaactgtaattatagaaagtgatgat
gacatgcagatagatggcaagccagctttgcataaggatggtgaatgtagttcgggagaa
gttgaaaaggtggttgatatcattgatcttgatctttccccatcacaaagcccaaagctc
agcgataagagtttgtctaaagctttcaagtgtactatttgcactgaaatgttgaatgcc
tctgatgtgcatcgccaccctgtactggatgttactgtttgtggattatgcagatttctg
gtgatagagaagaatcgtcttgaggatcctgtatctggtggttattgcacttggtgtgcg
caaagcgaacaacttcagagttgtagttcttgtaagctgcttttttgtacaaattgtttg
tcaaagaatttaggtgaacaatgcttatcagaagctaaagtcactggctggcagtgttgc
tgctgcatacccagtcaactggaacttttaatatctgagtgtgacaaggccctcagtgtt
gaatcttctgatccagagagcagcaacacggagctttctggaccggaaaacaatggtcct
gttagcaagaggaaaatgaaaaagaggataagaagaatcattgatgatacagaacttggg
gaggaaacaaagcgtaaaattgcaatggagaaggctaggcaagaccatttgaagtccatg
caagagcaatctgccagcaagttaaggagtgagaacattggaacttcctttggagctgta
tcagaagtctctctagaggatgctggggatggacatatagttaaccttgccagggaggaa
gatgaggaacctgttaggattccaagcagcatgtcttctaaactgaagcctcatcaggta
gaaggaataaggtttatgtgggaaaatgttattcaatctgttaaaaaggtcaaatctggg
gataaaggtcttgggtgcattttggcgcataacatgggccttgggaaaacctttcaggtt
attacattcctgtacacaggtatgagatatgctcaattgggattgcgcacagcacttata
gttacccctgttaatgttctgcataactggaggaaagagtttaccaagtggcgtccagca
gaactgaagcctcttcgtgtatttatgttggaagatgttgcaagggtgaaaaggccgtat
ttactagacaaatggcgactaaaaggcggagtgcttctcattggttattcatcatttaga
aacttatcccttggaaagcatgtgaaggacaaaaatactgcaaatgatattagttatgct
ttgcagtgtgggccagatattcttgtatgcgatgaagcacatatgataaagaataggagg
gccgacattacgcaggctctgaaacaagtaaggacacaaagaagaattgcgttaactgga
tctccgttgcagaataatttgatggaatattattgtatggttgattttgtcagggaaggt
tttcttgggagtagccatgaattccgaaacaggttccagaaccccattgaaaatgggcaa
cacacgaattcaacatcagatgatgtcaaggtcatgaaccaacgatcccacattttgttt
gaacaactgaaaggttttgtccagcgaatgggcatgaatgttgtgaagaatgatctaccg
ccaaagaaggtttttgttattactgtaaagctctctcaactgcagaggaagctatacaga
agattcttggatgtgcatggtttctcaagtagtggttattcagaaaaatcacacagttcc
ttctttgccaagtaccaaacattagcccaggtatggaatcatccggggcttctccagatg
gctaaagaacagagaggaaatttgcgccaagaagatgcggttgagaactttctgatggat
gagagctcaagtgatgataatgttgaaaattccttgcctaacggagagaagcagaaggat
aaaactgatcagcagtccaagaaaagcaactttgtaaatgaggaaggtaactggtgggag
gaccttctagatgagaacacttatatggaagcagattacagtggcaaaatgatcttgctc
cttgatatcctgtcaagaagctctgaattgggcgacaaggtattagtgtttagccagagc
ttgaccactctggatttagtggaattttatctgtcaaaaatgcaaaccaaaggaaaagaa
ggcaaacattggaagcgagggaaggattggtacaggcttgatgggagcactccatcttct
gatcgacagaatcttgttgagaggtttaatgaccctgaaaacacgagagtgaagtgcaca
ttgatatctactcgtgccggatctctgggtatcaaccttcatgctgcaaatcgtgtagtt
cttttggatggttcatggaatccaacacatgatctgcaagccatttatcgggtttggagg
tatggccagaccaaacctgtatatgcttaccgcctaatggcacatagaacaatggaagag
aaaatatataagcggcaggtgacaaaagaagggcttgcagcaagggtggtagatagacag
caagtttctagaacaatctccaaggaagagatgttgcatctttttgaatttggtgatgaa
gaattagtggagcagagcgagaatagttctaccatgattgattgccctaaagttgttact
gagaagccatccacttctaacaccattggaacttctgagcttgtcccggtggacaggctc
atgctgaacctactcagtgaacacactcggtggattgcaggttaccatgaacatgaagct
ctcctacaagaaaatgaagaagaaaggcttacgaaggaggagcaagacatggccttgtca
gagtgggaggcattgaggaaagctgtacgtgaccccgacagaaaatcaaatacgacagct
attccaacagattccaaccttgtgcagccacctaaggttacttcaagaagccggcaacca
cagcaacctaaggttaattcaagcaaccaaaagaagtgcaacaacttaacccacttgctg
actctaagaagtcacggcaccaaagcagggtgcacaacaatttgcaaagaatgtgaccag
gagatctgttgggagacactgaacagagagggtaggtcgaggtga
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