Phragmites australis (common reed): 133907411
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Entry
133907411 CDS
T10575
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133907411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133907411
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
133907411
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
ELL
Chordopox_RPO7
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
133907411
NCBI-ProteinID:
XP_062205435
LinkDB
All DBs
Position
24:14942006..14949845
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AA seq
531 aa
AA seq
DB search
MGSLDLVLKPACEACSSTSELYGTGCKHTTLCSTCGKSMARSRARCLVCSAPITRLIREY
NVRANAITDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQITENMREKYNRKPWI
LEDETGQYQYQGQMEGSQSATATYYLLMLHGKEFNAFPAGSWYNFSKIAQYKQLTLEEAE
EKMNKRKTSATGYERWMMKAAANGPAAFGSDMNKLEATNGGEKESAHSKKGKNNEEGNNS
DKGEEDEEEEAARKNKLGLTKKGMDDDEEGGKDLDFDLDEEIEKGDDWEHEETFTDDDEA
VDVDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRSAGLNESDADEDE
EEDDQEDESSPVLAPKQKDQLKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGVDDAK
TSCSAASKKAKVESDTKASGVKDEATPSTKPTSKASASAKSGTNVSPVTEDEIRSVLLAV
APVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLREDKK
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcttggacctggtgctcaagccggcgtgcgaggcctgcagctccacgtcggag
ctctacggcacggggtgcaagcacaccacgctctgcagcacctgcggcaagtccatggcg
cgctcccgcgcccgctgcctcgtctgctccgcgcccatcaccaggctcatccgggaatac
aatgtacgagctaatgctatcacagataagacttactctattggaagatttgttactggt
ttacctccattctcgaagaagaagagtgctgagaacaaatggtctcttcataaggagggc
ctacaaggacgacagattactgagaatatgcgggaaaaatacaataggaaaccatggatt
ttggaagatgaaacaggccaatatcagtatcaaggtcaaatggagggatctcagtcagct
acagcgacgtactatctgttaatgttgcatggcaaggaatttaatgcatttcctgctggt
tcctggtataacttcagtaaaattgcacagtacaaacaactcacactggaagaggctgaa
gaaaagatgaataagaggaagaccagtgcaactggttatgaacgctggatgatgaaagca
gctgcaaatgggccagctgcctttggttcagatatgaacaaacttgaggccacaaatggt
ggggaaaaagaaagtgctcattccaagaaaggaaaaaataatgaggagggtaataattct
gataaaggcgaggaggatgaagaagaggaagctgcacgcaaaaataagcttggactcaca
aaaaagggcatggatgatgatgaggaaggtggaaaagatctggactttgatttggatgag
gaaattgaaaaaggtgatgactgggagcatgaagaaacatttactgacgatgatgaggct
gtggatgtcgacccagaggaacgtgcagatttagctcctgaaattcctgctccacctgaa
attaagcaggatgatgaagagaatgaagaagaaggtggtctaagcaagtctggcaaggaa
ttaaagaagctgcttgggcgctctgctggactaaatgagtcagacgctgatgaggacgaa
gaagaagatgatcaggaagacgagtcatctccagtgcttgctccaaaacagaaggatcaa
cttaaagatgaacctgtagataacagcccagctaaaccaacaccatcagggcatgctcga
ggcacacctcctgcatccaaatcgaagcaaaagagaaaatcaggtgttgatgatgcaaaa
acttcttgtagtgcagcttcaaagaaagcaaaagtggaatcggatacaaaagcatcaggt
gtcaaagatgaggcaacgccttcgacaaaacctacatcaaaggcctctgcttcagcaaaa
agtggaacaaacgtgtcacctgtcacagaggatgaaatcaggagtgttcttcttgcagtg
gctccagtcaccacgcaagatttagtatccagatttaagtctagacttcgtggtccagag
gacaagaatgctttcgctgaaattctgaagaaaatctcgaagatacagaagactaatggc
cacaattacgtcgtccttagagaggacaagaagtga
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