Phragmites australis (common reed): 133908329
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Entry
133908329 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133908329
KO
K14794
ribosomal RNA-processing protein 12
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paua03009
]
133908329
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
90S particles
Other 90S particles
133908329
Pre-60S particles
Other pre-60S particles
133908329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
Pkinase
RRP12_HEAT
PK_Tyr_Ser-Thr
HEAT_GCN1
ABC1
Motif
Other DBs
NCBI-GeneID:
133908329
NCBI-ProteinID:
XP_062206300
LinkDB
All DBs
Position
2:50861969..50875928
Genome browser
AA seq
1742 aa
AA seq
DB search
MKRKQRASAADADEPSQAPLPLESFSGDVFTALTARYGRSAAPQHRHVLASAAAIRSILL
DDGLPLTPASYLLAAVSSLRATGPADPAAASALASLLVILLPHIPSSPSSLAPAAASESA
SALAAFLSSPDASQLPTGTVRSVVKSLGHLTLHLDAASDWGDVAAPLEALLAASVSQRAK
VRKCAQESAEKLFAYLEQSGCAKKASNAAIGMFENHISSARSLINLDSDVSEVNETEAAH
MLGAMVVFVPYLSKKARMRVFSEAYQLLSSSFTPLTRHVLKLLGILLDHLKAENAESEVE
SLVSLVVAYLPYDEKKPDDTIVSALHLMKSCLDKLVGRPKLWMEALPVALEAVSGYLILG
RKCSDDIAKVLQDCIDSYIDRNVFVTNGSQLTNCGVEGLSDQAVMKSICLSINNRLQTCS
YPLDSILTIVLVLFLKLGESSYVFMKDILLTLSQFSMKLDKESHLKNVEECIGAAVIAVG
PDKILSLIPITFDEDRLTCSNTWLLPILEKYMYGAPLQHFLEHIVPLAKSVQNASNRVKK
SRKRKDLQSWTDQLWNLLPAFCRYPIDVHHSFSSLSKLLVEMLKCDECLYKPAVKALQQL
VDGTRRLSSSDQDVDIDMELSALFSLKHNNFNYSCLERCSKEGACKALKVLASHSANLLC
TFADYFFESSLEKRAYLKDALRCLAPLSSSANISELFVSLVKRFDLEDAPLDPESLECQT
NEVDGKDEKTTDAATGLNDKRSVLLELISTLTEAADEDLLDIFFGFIKSSLLNSSRSCDN
KALIALSIILKEHNGYSLTRLDEIMMLLHGVKSDLDNAVLESQLLCYQYLLVHMIKVNEE
STSKKAFLILNDLILTLKSKKESRRLAYDVLLAISTALRSSESNSADSDLQRLFTMVMGY
LSSPSPHIVSGAVAALSLLIYNDANFCMEVPNLIPSVLVLLKHKAIEVTKASLGFVKVLV
TSLQSEKLLNLQADIMSGILPYSSVTKHHFKGKVVLILEILIRKCGFDAINLVTPEMYKA
FVRSVEEGRKGNYNPADGAESEAPDHTQHDVKRRKRVASNAETGQEETPSRPPSKSWSAG
KKQAKDFHFKKGAGRGNSHVAKSQQSKASGGKGDRTNFKSKSKWQPGNSQRNRGDKSPGS
NKRTRGGMFNKRQNRGSRASGHSYIERPSWLKKKISKLRFSPVNTPGPTFPLNSPWLESP
AQPERSRASNAAAAAASEGCLVVSATMAVAAPGQLNLDETPSWGSRSVDCFEKLEQIGEG
TYGQVYMAKETDTNEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIKLKEIVTSP
GPERDDQGKPIEGNKYKGSIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHY
CHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSSDHNGNLTNRVITLWYRPPELLLG
STKYGPAVDMWSVGCIFAELLNGKPILPGKNEPEQLNKIFELCGTPDDLIWPGVTKMPWY
NNFKPSRPIKRRVKEFFKHFDRHALDLLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDP
KSLPKYEASHEFQTKKKRQQQRQAEEAAKRQKIQHPPPHSRLPPIQQPGQPHSQIRPGQG
MHNAPPVAAGPSHHYAKPRGPGGPNRYPQGGNQSGGYNPNRGGGQGGGYGSGPYPQQGRG
PPPYPGGGMGGAGGPRGGGGSGYGAGGPNYPQSGPYGASGPSRGPNYPQGGSRNQQQYGN
WQ
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggaagcagagagcctcggcggctgacgccgacgagccctcccaggccccgctc
cctctcgaatccttctcgggcgatgtcttcacagctctcaccgcgcgctacggccgctcc
gccgccccgcagcaccgccacgtcctcgcctctgccgccgccatccgctccatcctcctc
gacgacggcctcccgcttacccccgcatcctacctcctcgcagccgtctcgtctctccga
gccactggccccgccgaccccgccgccgcctccgccctcgcttctcttctcgtcatcctc
ctgccccacatcccatcctccccctcctccctcgcgccagccgccgcctccgaatctgcc
tccgcactcgccgccttcctctcctcacccgatgcctcccagctccccaccggtaccgtg
cgctccgtggtcaagtcactcggccacttgaccctccatctcgacgctgcatctgattgg
ggtgatgtggcggcgcctcttgaagctctcctcgcggcttctgtgagccagcgggccaag
gttcgaaaatgtgcgcaggagagtgccgaaaaactatttgcatacttggaacagtctggt
tgtgcgaagaaagctagcaatgctgcaattggcatgtttgagaatcacatttcttcagcg
cgaagtcttatcaatttggattcagatgtttctgaggttaatgagacagaagcggctcat
atgctaggtgcaatggtagtttttgttccatatctatcgaagaaggcaaggatgagggtt
ttctcagaagcttatcagctattgagttctagttttaccccacttacgaggcatgtactt
aaacttttgggaatcttgttggatcatctgaaggctgagaatgctgaatcagaggtggag
agtcttgtatccttggtcgttgcttacttgccttatgatgagaagaagcctgatgatact
attgtctcagcattgcacctaatgaaaagttgcttggacaaacttgttggtcgcccaaaa
ttgtggatggaggctcttccagttgccttggaggcagtttcaggatacttaattctgggg
agaaaatgttctgatgatatagcaaaagtgttacaagactgtattgactcttatatcgac
cgaaatgtttttgtcactaatggatcacagctaaccaactgtggtgttgagggtttgagc
gatcaagctgtcatgaaatcaatctgtttatcaatcaataacagacttcagacatgttct
tatcctctggacagtatcttaacaatagtcttggttttgtttctcaaacttggggagagt
tcttatgtctttatgaaagatattctacttaccttgtcacagttttctatgaaactagac
aaagaatcacatctgaagaatgttgaagagtgcattggagcagcagtgattgctgtggga
ccagataaaatcctttcattaattccaataacttttgatgaagacaggttgacatgctca
aatacttggcttctacccattttggaaaagtatatgtatggagccccgctgcaacatttt
ctagagcatattgtaccactagcaaaatctgtacaaaatgcttctaacagggtcaagaaa
tcacggaaacgtaaagacttgcaatcttggactgatcaactatggaacttgctccctgcc
ttctgccgctatcccattgatgtacatcacagttttagttccctgtccaagttgctggtt
gaaatgttgaagtgcgatgagtgtctgtacaaacctgctgttaaagccctgcagcaactt
gtagatggaactagaagactaagtagcagcgatcaagatgttgatatcgatatggaactt
tcagccttgttctccttgaaacataataatttcaactattcatgtttggagaggtgctcc
aaagaaggtgcctgcaaggcgttgaaagttctggcatcacattctgcaaatcttctttgc
acttttgcagactatttctttgaatcctcactggaaaagcgtgcttatctgaaggatgct
ttgagatgcctggctccactttccagtagcgcaaacataagtgaactttttgtttcacta
gtcaaaaggtttgatttagaagatgctccactggatccagagagtctagaatgtcaaact
aatgaggtagatggaaaggatgaaaagactactgatgcagcaacggggctaaatgataaa
aggtctgttctattggaactcatttccacgttgactgaagctgctgatgaagatttactt
gatatattctttggatttattaagtcttctttgctgaacagcagcaggtcctgtgacaac
aaagctctcatcgcattaagcataattctgaaggaacacaatgggtactctttgacccgt
ttggatgaaataatgatgttgcttcatggagtaaagtcagatttggataatgcagtttta
gaaagccaattattatgctaccagtatttattggttcacatgattaaggttaatgaagag
agcaccagcaagaaggcattcttgattctaaatgatctaatactcacgctaaagtctaag
aaagaaagtagaagattagcatacgatgttctcctggcaattagtactgccttgaggagt
tccgagtcaaatagtgcagactcagatcttcaacgactgttcacaatggtaatgggatat
ctttctagtccatcgcctcacattgtgagtggagcagtagctgcactatccttgcttata
tataatgatgcgaatttttgcatggaagttccaaatctgataccatcagttttagttttg
ctgaaacataaagctattgaagtaactaaagcatctttgggctttgttaaggtattggta
acctctttgcaatcagaaaaactactgaatttgcaagcagatatcatgagtgggatatta
ccatattcatcagttacaaagcaccattttaaagggaaggttgtactgatattggaaata
ttgattaggaaatgcgggtttgatgctatcaacttagttacacctgaaatgtacaaggcc
tttgttagaagtgttgaggagggtcgcaaaggaaattataatccagctgatggtgctgag
tccgaggcaccagatcacacgcaacatgatgtcaaaaggagaaaacgtgttgcttctaat
gctgaaactggacaagaagaaacacctagtcgaccaccatcgaagagttggtcggccgga
aagaagcaagcaaaggattttcatttcaagaaaggtgcagggagaggtaactctcatgtt
gctaaaagccaacaaagcaaagcttcaggcggcaaaggcgataggactaatttcaagtca
aagtccaaatggcaaccagggaatagccaaagaaacagaggcgataaatcgccaggaagc
aacaaaagaacaagaggcggtatgttcaacaagagacaaaatcgtgggagtcgagcatcc
gggcactcctacatcgaaagaccatcttggctaaaaaaaaaaatcagtaagttgaggttc
agccccgtaaatactcccggccctacctttcccctcaactccccttggctcgagagccca
gcccaacccgagcggagccgagcaagcaacgccgccgccgccgccgcgagcgagggttgc
ctcgtggtctcggcgaccatggcggtggctgcccccgggcagctcaacctcgacgagacc
ccatcatggggttcccgcagcgtcgactgcttcgagaagctcgagcagatcggcgagggc
acctacgggcaagtgtacatggcgaaagagacggacacgaacgagatcgtagcgctcaag
aagatccgcatggacaacgagcgcgaaggcttcccgatcaccgctatacgcgagatcaag
atcctgaagaagctgcaccaccagaacgttatcaagctcaaggagattgtcacctcccca
ggaccggagcgagacgatcaagggaagccaatcgagggtaacaagtacaaagggagcatt
tacatggtcttcgagtatatggatcatgacctgactgggcttgcagataggccagggatg
cggtttactgtgccacagattaagtgttacatgaggcagctgcttacaggtcttcattat
tgtcacgtcaatcaagtgctgcatcgagatattaaaggatctaacctcttgatagataat
gagggtaacttgaagcttgctgattttggccttgcaagatcattctcgagtgatcacaac
ggaaaccttactaaccgtgtgatcactttgtggtataggcctccagagttgctactcgga
agcacaaagtatggtccagctgttgacatgtggtcagtgggctgtatttttgcagagctt
ctcaatgggaagccaatattgcccggaaagaatgagccagagcagctgaataaaattttc
gagctttgtggtacacctgatgatttaatctggcctggtgtcacaaaaatgccatggtac
aacaatttcaagccttcccgaccaataaagagacgggttaaagagttctttaagcatttt
gatcggcatgcactggatctgttagagaagatgttgactttagatccatcacagaggata
tcagcgaaagatgctcttgatgcagagtatttctggactgatcccttgccctgtgacccg
aaaagcttgccaaagtatgaggcatcgcatgaattccagaccaagaagaaacgtcagcaa
cagaggcaagcagaggaagctgcgaaacgtcaaaaaattcagcatcctccaccacattct
cgtttgcctccaattcagcagccaggccaaccacattctcaaatcaggcccggccagggc
atgcacaacgcaccgcccgtggcagctggcccgagccatcactatgcaaaaccccgtggg
ccaggaggccctaacaggtatccacagggtgggaatcaaagcggaggctacaatccgaac
cgcggtggagggcagggtggtggatatggaagtggtccatatcctcagcaaggaagagga
cctcctccttaccctggtggtgggatgggtggagcaggtggtccacggggtggcggtggt
agtggctatggagctggtggaccaaattacccacaaagtggcccatacggtgcgtccggt
ccaagccgagggccaaactaccctcaaggtggttctcgcaatcagcagcagtatgggaac
tggcaataa
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integrated database retrieval system
