Phragmites australis (common reed): 133908538
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Entry
133908538 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133908538
KO
K06100
symplekin
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133908538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133908538
03019 Messenger RNA biogenesis [BR:
paua03019
]
133908538
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133908538
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133908538
U7-dependent histone pre-mRNA processing factors
133908538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
133908538
NCBI-ProteinID:
XP_062206593
LinkDB
All DBs
Position
2:complement(35267427..35282405)
Genome browser
AA seq
1291 aa
AA seq
DB search
MEFGEDGAQWPQPRGEAAEALPPMLSDRGEVASPRFDSSRALRLLRDLGTHVTEDLVVLM
PNLLSFLKHDDPAVVKQSIASGTNLFAAVLEEMALQINKCGKIDAWLEEMWDWMKQFKDA
VRCVIHEPGPISTKLLAVKFVEVWILCFTPQVNSDQIQPSEGKSRRFDTSRLSQFHPSLD
PVVLEADANRALILLLDILQSAYAYRGSFLVGTINSLAAVVKNRPIYYDRVLPVLLDFDP
GSETTKGAHAASLRYSLRTAFLGFLRSPHPAMIESKDILVRQLRALSPGDAIDQIIRQAE
KMSRNVDRASRSSKDVPPTWEMPYGDINRKKPAARSSDVLAMSDGVAKRARFDTSAISNL
PVQGSSDYSDMQVDNDANLGHSSDPAILNSDVSPVEKMIEMIGALLAEGERGAESLDILV
STVEADVMADIVIETMKHIPEPPFPLATNNGVQQPVFKSSSTPPTENLPSSPDSSLFAAQ
LTPTADAASMLPSDAFVIPSVHDTKRDPRRDPRRLDPRRTVSHAATSSIQAKVETNNVHQ
MDNLPNTPCSSSGKVENYLDYSGDLLKTEDEQHTSSQPNQTVSKDKSELLDVATEPEPTF
EVVAPVDAGLNSSDVDEEMVNPLSSEVTSLDESDSVDLEVDPFLPVPTASTPEDTDHDLP
VIPSHLELSVKEKISLNKEAIRRIIADYKKNSLNARFSLLAHLIAQSADDDNIMDLIQRH
IIFRCNDQKGYELAMHVLYQLQSINVADSPESSTPASKHYEKFFISLARSMINSLPASDK
SFCKLICDAPYLPESLFRLLEGLCMSQGNSQQIKDGDGDRVAQGLGTVWNLILGRPPLRH
VCLDIALKCTVHSQDEVRGKAVRLVAKKLYDLTYATERIEQFATESLVGVAKHVDTDINL
TCSKESTAELEVGTQEASGSGSQIPDSGPSESGSSKTSLISLKQSAISVSEAKCRTSLFF
ALCTKRPSLLQHLFNVYGRSPEVVKQCIHWHIPSLVRNLGSSCPEMLDIIHNPPEGSEGL
VTLILQTLTEESNPSADLVAAVKHLYKTKLKDASILIPLLSSFPKEEVLAIFPRLVDLPL
GRFQDALARILQGTAHTGPALTPAEVLIAIHDINPEKDKVALKKVTDACTACFEQRTVFT
HQVLEKSLNELVDRVPIPLLFMRTVIQALDAFPALVDFVMGILSRLVNKQIWRMPKLWVG
FLKLAFQIQPHSFDVLLQLPPPQLEFMLNKYPNLRTPLSSFVNQHNMQNTLSRQILRILG
FFNEPQQAPVSFVPATLQTADATSLPGATQM
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggaatttggggaggacggcgcccagtggccgcagccgcgaggcgaggctgccgaggcg
ttgccgccgatgctgtctgaccgcggcgaggtcgcctcaccgcgcttcgattcgtctcgt
gctctaagattgctgagagatcttggcacacatgtaacagaagatttggttgtgctgatg
ccaaatttgctgtcatttttgaagcatgatgaccccgcggttgttaagcaatctatagct
agtgggacaaatttatttgctgctgtattggaagagatggcacttcagattaacaagtgt
gggaaaattgatgcttggcttgaagagatgtgggattggatgaagcagttcaaagatgca
gtccgttgtgtgatacatgagcccggccctatttcaactaaactactcgctgtaaagttc
gttgaggtatggatcttgtgtttcacacctcaagtcaacagtgatcaaatacagccaagt
gaaggaaaatcccggagatttgatacttcacgattatctcagtttcatcctagccttgat
cctgttgttctggaggctgatgcaaacagagctctcatcctcctactggatattctgcaa
tcggcttatgcttatcgagggtccttcctagttggcaccattaactctcttgcagcggtt
gtgaagaatcggccaatttactacgaccgcgtgctgccagtgttgcttgattttgaccct
ggctcggagacaacaaaaggagcccatgcagcaagcctgcggtattctctaagaacagct
tttttggggtttctacggagtcctcaccccgcaatgattgagtccaaagacatattggta
aggcagcttcgggctctgagccctggtgatgcaatagatcaaattattaggcaggcagag
aagatgtctagaaatgtagaccgtgcttctcgttctagcaaggatgtgcctccaacatgg
gagatgccttatggagatattaatcggaagaagcctgctgccagatcaagtgatgttctt
gctatgtctgatggcgtagctaagagagcaagattcgacacatctgccatttcaaatctg
ccagttcagggatcctctgattattctgatatgcaggttgacaatgatgccaatttgggt
cattcgtctgatccagctatcttgaatagtgatgtgtctcctgttgagaagatgattgaa
atgattggtgctttacttgctgaaggagaaagaggtgctgagtcccttgatattcttgtc
tcaacagtagaggcagatgtcatggctgacattgtaatagaaacaatgaaacatatacca
gaacctccatttcctttagcaacaaataacggtgtccagcaaccagtttttaaatcttcc
tccactccaccaacagagaacctgccatccagtccagactcgtcgctgtttgctgcacag
ttaacacccacagcagatgcagcaagcatgttaccatctgatgcctttgttattcctagt
gttcatgatactaagcgtgacccaagaagggaccctcgtcgccttgatccacggcgtaca
gtttcacatgctgctacaagttcgatacaggcgaaggtggaaaccaataatgtgcatcag
atggataatttaccaaatacaccttgctccagttctgggaaggttgaaaactatttggat
tattcaggagatttactgaaaactgaagatgaacagcacacatcttctcagcccaatcaa
acagtttccaaagacaagtctgagcttctggatgttgccaccgaaccagagccaaccttt
gaagtcgtggcaccagtggatgctgggttaaattcttctgatgtcgatgaagagatggtt
aatcccttgtcttcagaagttacttcacttgatgaatctgatagtgtggatttggaggtt
gacccctttttaccagttcccacggcttcaacaccggaggatactgatcatgacttgcca
gttattccatctcatttggaattaagcgtcaaagagaaaatctcattgaacaaagaagca
attaggcggataattgctgattacaagaaaaacagtcttaatgcaagattttctttgctt
gctcatttgattgcccagagtgctgatgatgataatattatggatttgattcagaggcac
attatctttcgttgtaatgatcagaaggggtacgaactggcaatgcatgtgctatatcag
ctgcagagtatcaatgttgctgattcgccagaaagctctacgcctgcttctaaacattac
gagaaattctttatatcacttgcgaggtccatgattaactcactgcctgcttcagacaag
tctttttgcaaacttatatgtgatgcaccatacctgccagagtctttgtttagattactg
gagggtctttgcatgtcacaaggcaacagccaacaaataaaggacggggatggtgaccga
gtcgcccaaggcctgggaactgtatggaaccttatcttagggcggcctccacttcgacat
gtttgcttggatattgctctgaagtgtaccgtccactctcaagatgaagtcaggggaaag
gcagttagattggttgcaaaaaagctctatgatctaacatatgcaacagaaagaatcgag
cagttcgccacagaaagtcttgtaggagttgctaagcatgtggacacagatattaattta
acatgctcaaaagaatctacagctgagttggaggtaggcactcaagaagcttcaggtagt
ggctcccagattccagattctggaccttctgaaagtgggtcatccaagacatcattgatt
tcactgaaacaatcagcaatatctgtatctgaggcgaaatgccgtacttcgttgttcttt
gcgctttgcacaaagaggcctagccttcttcaacatctgttcaatgtttatggaaggtct
ccagaagttgtcaagcagtgtattcattggcatatacccagccttgtaagaaatctgggg
tcctcatgtcctgagatgctggacatcattcataatccacctgaaggcagtgaaggtctt
gttaccttgatactgcaaacattgaccgaagaatcaaatccttcagccgacctagttgcg
gctgttaaacatttatataagacaaagctgaaggatgcatctattctcattcctttgcta
tcttcatttccgaaggaagaggtattggccatatttccgaggctagttgatctcccgctt
ggcagattccaagatgcacttgctcggatattgcagggaaccgctcataccggtccagca
ttaactcctgctgaagttctgattgcgattcatgatattaaccctgaaaaggataaagtt
gccctgaagaaggtcacagatgcttgcacagcttgctttgagcagcgtacggtatttact
catcaagttttggaaaaatcgctgaatgaattggttgacagagtaccaattcctcttctt
tttatgagaacagttattcaagcgcttgatgctttcccagctttggttgattttgtcatg
ggaatactctccaggctcgtcaataagcagatatggagaatgccaaagctgtgggttggg
ttcttaaaattggcattccagattcagccacactcttttgatgtcttattacagctacct
ccaccacagcttgaatttatgttgaataagtatcccaatcttcgaacacctctttcttca
tttgttaatcagcacaacatgcagaacaccttgtccagacagattttgagaattctgggc
ttctttaatgaaccacagcaggcaccagtgtcatttgtgcctgctacgttacaaacagcg
gatgcgacctctcttcctggtgcaacccagatgtga
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