Phragmites australis (common reed): 133908831
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Entry
133908831 CDS
T10575
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133908831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133908831
03012 Translation factors [BR:
paua03012
]
133908831
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133908831
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133908831
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133908831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
Ank_2
nSTAND3
Ank_5
ATPase
AAA_19
AAA_22
ResIII
AAA_7
Rad17
PhoH
AAA_25
ABC_tran
NPHP3_N
AAA_23
AAA_16
Motif
Other DBs
NCBI-GeneID:
133908831
NCBI-ProteinID:
XP_062206988
LinkDB
All DBs
Position
2:40090926..40102798
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AA seq
1284 aa
AA seq
DB search
MVHMSFVPVHPNLLRRPLFRKAPPPSRFSFGAPQQRSVNEATAAATRQPPFSQTGRAAPD
EAGKPPRPIRGDVDEEEERMGRKGRKGKDAAAGGAAGGSGGGGGGMREATLVRVSKLLED
FRASDAEVYTFEPDISKQERAAIHEMCRKMGMISKSSGYGERRRLSVYKNKQKQGPDMEE
GPSHLGFSEEARHVLQDLFTHYPPDDADLNGDAVRNSSDKPANIKWKPDSAFCRPAMGKP
DIAKKVEKLASKINGSAQLRKITQDRSKLPISSFKDVISSTLENHQVVLISGETGCGKTT
QVPQYILDHMWAKGESCKIICTQPRRISAISVAERISAERGEAVGDTVGYKIRLESKGGN
NSSILFCTNGVLLRVLIGRGTNTSKARNPKRSLDDTVLGITHIIVDEIHERDRFSDFMLT
ILRDLLPVYPHLRLVLMSATIDAERFSQYFNGCPVILVPGFTYPVKTFYLEDVLSILHSV
GDNHLNPTTSDLKQSSVLADDIKSSMDDSINLALVNDEFDPLLELISVEQNPEIYNYQHS
ETGVTSLMVFATKGHLGDVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHME
CSSAKSAEDNELLNKYLATINPEHIDTVLIVRLLGKICVDSNEGAILVFLPGWEDINQTR
ERLLASPSFRDSSKFLVLSLHSMIPSSEQKKVFKHPPSGVRKIILSTNIAETAVTIDDVV
FVIDSGRMKEKSYDPYNNVSTLHASWVSKANARQREGRAGRCQPGTCYHLYSRFRAVSLP
DYQIPEIKRMPIEELCLQVKLLDSNCRIADFLKKTLDPPIPETVRNAITLLQDLGALTQD
EQLTDLGEKLGSLPVHPSTTKMLLFAILMNCLDPALTLACAADYRDPFLLPMAPDERKRA
AAAKVELASLYGGFSDQLAVVAAFDCWRRAKDRGQESQFCTKYFVSPNIMNMLSNMRKQL
QNELSQRGFVPADTSACSLNSKDPGIMRAVLMAGAYPMVGRLLPPRKNARKAVVETTSGV
KVRLHPHSCNFNLSFSKPSGNPLVIYDEITRGDGGMYIKNCSVIGSYPLLLLATEMVVAP
PDDSDEEDEDSSEDEAEKNTIVQHKEEIMSSPDNTVSVVVDRWLRFDATALDVAQIYCLR
ERLASAILFKVKYPQDVLPPALGASMYAIACILSYDGLPTMVPSNDFSTNRALSQNSAEA
SRFSQGRRVGYIPPGGFLISLLADKPHNTAPFQKSSNHPGGASGNTRPSRPSVGRFDQSQ
RPFRNSVPGSSTPRSFKRQRDAAR
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggtccacatgtcattcgtgcccgtgcatccaaacttgctgcgccgcccgctcttccgc
aaggcaccaccgccgtctaggttttccttcggtgcaccgcaacagcgcagcgtcaacgaa
gcgaccgccgccgcgacgcgccaacccccgtttagccagaccgggcgcgccgcaccggac
gaagccggcaagccaccgcgcccgattcgcggcgacgtcgacgaggaggaggaaaggatg
gggcggaaggggcgcaaggggaaggacgcggcggcagggggcgccgccggagggagcggc
ggtggcggcggcggcatgagggaagcgacgctggtgcgcgtctccaagttgctcgaggac
ttccgcgcctccgacgccgaggtgtacacatttgaacctgatatatccaaacaagagcga
gctgcaatccatgagatgtgtagaaaaatgggcatgatatccaaaagttctgggtatggg
gaaaggcgacgcctttctgtttataaaaataaacagaagcaggggcctgacatggaagaa
ggccctagccaccttggattttctgaagaagcgagacacgttttgcaggatttatttaca
cattatcctcccgatgatgctgatttaaatggggatgctgtcaggaattctagtgataag
cctgcaaacattaaatggaaaccagatagtgccttttgcaggccagcaatgggcaaacct
gatatagcgaaaaaagtcgagaagcttgcctctaaaataaatggatctgcacagttgaga
aagatcactcaagacagatccaaacttcctatttcatccttcaaggatgtcatctcttcg
actttggaaaaccaccaggtggttcttatttctggagaaacaggctgcggtaaaaccacc
caggttcctcaatacatcttggatcatatgtgggccaagggtgaatcatgtaagatcata
tgcactcaaccacgtcggatatcagctatttcagttgccgagcgaatctctgctgaaaga
ggagaggctgttggtgacacagttggatataagatacgtttggagtcaaaaggaggaaac
aattcatcaatcttgttctgcacaaatggcgttcttttgagagtattgataggaagagga
actaacacctcaaaagcacgaaatccgaagcgctcgttagatgatacagttttggggata
acacacatcattgtggacgaaatccatgaaagggataggttttctgatttcatgctgact
attctaagagatttgttgccggtgtatcctcatcttcgtttggtactcatgagtgcaaca
attgatgctgagcggttttcacaatacttcaatggatgcccagtcattctagtccctggg
tttacctatcctgtcaaaactttctatttggaggatgtgctttctattctgcattctgta
ggcgataatcatcttaatcctacaaccagtgatctgaaacagagcagtgtattagctgac
gatatcaaaagctcaatggatgattcaattaatctggctttggtcaatgatgaatttgat
cctctccttgagcttatttctgtagagcagaacccagaaatctacaactaccagcattca
gagactggtgtaacatctttaatggtttttgctacaaagggtcatcttggtgatgtttgt
atgcttttatcgtttggtgtggattgttcagcacaagatcatgatggaaaatctgcatta
gattgggcacagcaagagaatcaacaggaggtttgtgaagtaatcaagaaacatatggag
tgtagttcagcaaaatcagctgaagataatgagctgcttaataagtacttggcaaccata
aatccagagcacattgatactgtactaatagtacgtttgcttgggaaaatttgtgtagat
tccaatgaaggagctatcttggtatttcttcctgggtgggaagatataaatcaaacacgg
gaaaggttgcttgcttctccatccttccgggattcatcaaagtttcttgtgttgtcactt
cattccatgatcccatcttcagagcagaaaaaggttttcaaacatccaccatcaggcgtt
cgtaagatcattctttcaaccaatattgcagagactgccgtgacaattgatgatgttgtg
tttgtcatagacagtgggagaatgaaagagaaaagctatgatccatacaataatgtgtcg
acacttcatgcttcctgggtttcaaaagctaatgcaagacaacgtgaagggcgtgctggt
cgttgtcagccaggaacttgctatcatctttactcaaggtttagagcagtatcattgccc
gactaccaaattcctgaaataaaaagaatgcccattgaggaactttgtttgcaggttaaa
ctgcttgattcaaactgcagaatagcagactttttaaagaaaaccttggaccctccaatt
ccagaaactgtaagaaatgccattaccctacttcaggatcttggtgctttaacacaagat
gaacaactaacagatttaggagaaaagctgggttcccttccggtccatccatccacaacc
aagatgctcctgtttgctatattaatgaactgcctggatcctgcattgacattggcatgt
gcagcggattatagagatccgttcctccttccaatggctccagatgagagaaaaagagca
gccgcagcgaaggttgagcttgcttcattgtatggtgggttcagcgaccagcttgccgtt
gtggcggcatttgactgttggagacgtgccaaagataggggccaagaatctcagttttgt
acaaagtattttgtctctccaaacatcatgaatatgctgtcaaacatgaggaaacagctt
caaaacgaactgtctcaaagagggtttgttccggcagatacatctgcctgcagcttaaac
tccaaagatccaggtatcatgcgtgctgttcttatggctggtgcttacccaatggtaggg
agattgcttcctcctcgcaaaaatgctagaaaagcagtcgtggagacaacaagcggtgtc
aaagttcgtctacatccacattcctgcaactttaacctatcatttagtaaaccttctggg
aatccactagtgatatacgatgagatcactcgaggtgatggtggaatgtatattaaaaac
tgttctgtcattgggtcatatcctttgcttctgcttgctacagaaatggttgttgctcca
cctgatgacagtgatgaagaggatgaagattccagtgaggatgaagctgagaaaaacact
atcgtacagcataaagaagagattatgtcttctcctgataacactgtttcagttgttgtt
gatcggtggctccgatttgatgcgactgctctggatgttgctcaaatatactgcttaaga
gaacgtctagcatctgctattcttttcaaagtcaaatatccacaagatgttctcccgcct
gctcttggagcatcgatgtatgctattgcatgcatcctttcatatgatggcttgcctact
atggttccatccaatgatttttcaacgaaccgagctttgagccagaattcagcggaagct
agcagattctcccagggaaggagagtgggttatattccacctggtggtttcctcatatcc
ttgttagctgataagccacataatacagctccttttcagaagtcatctaaccacccaggg
ggtgcttcagggaacactcggccatccaggccctccgttggtagatttgatcaatcacag
cgtccttttcgcaattctgtaccagggagctcaacaccacggtctttcaaaaggcagcgt
gatgctgcacggtga
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integrated database retrieval system
