Phragmites australis (common reed): 133908837
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Entry
133908837 CDS
T10575
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133908837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133908837
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133908837
mRNA degradation factors
5'-3' decay
Decapping complex
133908837
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
133908837
NCBI-ProteinID:
XP_062206996
LinkDB
All DBs
Position
2:40179808..40186038
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AA seq
807 aa
AA seq
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MLGVEAAGGRGGASSSSAAENFDAGQYAFFGKESPVGLDLGCLEDAGGDGNVGGFSGPEE
GLYRLSSVGEEIDNLSNLSDIDDLASTFAKLNRSISGTRNPGVIGDRRSISRGSSLTVDW
AEDVDYPNWVDQDILENEEFQESKRWWSSHSSVQQGDSSSKPLSRTSSYPQQPLQHRLSE
PIVLPKTSSFTSFPPPGVGRSPYPAQGLTRHGSIPSTGAGLQMGSPSMSLSGSLYHMAGP
SHGLPYGGGMPYGALNLPANNPMQNDWSNQANPFTGEHLNLLPNLLHKQLSLPNSPMSSL
LFSQQQQRLAQVQSSHQNYLNLPPHLFYPHHPPEISGRFDSVSSVPSSRDKRSRSGRGKH
NIRFSQPQSDTGSQNGDSGGLKFRSKYMSSEEIESILKMQHSASHSSDPYAVDYYHQACM
AKRGATSRQKTNFSPASLKDLPSKSRSSSDQHTYLLVDALGKVSFSSIRRPRSLLEADKS
SSADGSRDQKTIMRPLEKEPMLAARVTVEDSLCLLLEVDDIDRLLQSSQAQDNSFQLKRR
RQVLLEGLAASLQLVDPLGPSKSGHSSGLAPKDDIVFLRIVSLPKGRKFLARYLRLLVPG
SELTRIVCMAIFRHLRFLFGGLPSDSSAAETTVALAKTVSSCVHHMELGALSACLAAVVC
SSEQPPLRPLGSSAGDGASLIIKSVLDRATELLTDHPAAANYTVPNRTLWQASFDAFFGL
LTKYCVSKCESILQMFVMQASSSVIGPEASKATSKEMPVELLRASLPHTNKQQRQMLLDF
AQRSMPVTGFNPPGASGGHVTSESVPG
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgtcgaggcggccggcggccgcggcggcgcgtcctcctcctccgccgcagag
aattttgatgctgggcagtacgccttcttcgggaaggagtcacccgtggggctcgacctc
ggttgcttggaggacgccggcggcgatggcaatgtcggtggattcagtgggccagaagag
ggtctgtaccggctctcctctgttggagaagagattgacaatttgagtaacttgtctgac
attgatgatcttgcaagcacttttgctaagttgaaccgaagcatcagtggaactcggaat
cctggtgttatcggggacaggcgatccatttcaagaggaagttctttaactgttgactgg
gctgaggatgtagactatccaaactgggtagatcaggacatattagaaaatgaggaattc
caggaaagtaaaagatggtggtcatcacattcttcagttcagcaaggggattccagctcc
aaaccattaagtcgaacatcttcctaccctcagcagccactgcagcaccgcttaagtgaa
cctattgttttaccaaaaacctcttcatttacctccttcccaccgccaggtgttggtaga
tcaccttatcctgctcaaggccttacacgccatgggagcattccatcaactggtgctggg
ctccaaatgggttctccgagcatgtcactttctggttccctgtatcatatggctggacca
tctcatggactaccatatggaggaggcatgccttatggtgctcttaacctgcctgcaaac
aatccaatgcaaaacgattggtcaaaccaagctaaccctttcactggggagcatcttaat
ctgctgcccaacttattacataaacaattatcacttcctaatagcccaatgtcatcactg
ctattctctcagcagcagcagagattggcgcaggtccaatcttcccatcagaattaccta
aatttaccgcctcacctattctatcctcatcaccccccagagatatcaggcaggtttgat
tctgttagcagtgttccttcatcaagagacaagagatcaaggtcagggaggggaaaacac
aacattcgcttctctcaaccacagtctgatactggtagccagaatggtgatagtggaggc
ctaaagtttagatccaagtacatgtcatctgaagagattgaatctatcctgaaaatgcag
cattcagcaagtcacagcagtgatccttatgccgtcgattattaccatcaagcttgtatg
gcaaaaaggggcgccacttctaggcaaaagaccaacttctccccagcatcactgaaagac
ttgccttccaagtctcgatccagcagtgaccagcacacatatcttctggttgatgctctt
gggaaagtttctttctcttccatacgtaggcctcggtctcttcttgaagctgacaaatct
tcatccgctgatggctctcgtgatcagaagaccattatgaggccactggagaaagaacca
atgctggcagcaagagtcaccgttgaagactccctctgccttcttcttgaggtggatgat
attgaccggctgttgcagtctagtcaggcacaggacaacagtttccaactgaagcgaaga
cgacaagtcctccttgaaggtctagctgcatcacttcagcttgttgaccctcttgggccc
agcaaatctggtcattcatctgggttagccccgaaggatgatattgtgtttcttcgtatt
gtctctcttccgaaaggacgcaagtttttggcacgttatcttcgacttcttgtccctggc
agcgaattgacccggatagtatgcatggctatttttcgccatctgaggttcttgtttggg
ggtttgccatcagactctagtgcagcagaaacgacagttgctcttgcaaaaactgtttcg
tcttgtgtgcatcacatggaacttggtgctcttagtgcttgccttgctgctgttgtttgt
tcatctgaacaaccccctctccgtcctcttggtagctctgctggtgatggggcttctcta
atcattaaatcagtactggatcgagcaactgagttactgactgatcatcctgctgcagcc
aactatactgtgccaaaccgaactctctggcaggcatcatttgatgctttctttgggctt
ctaacaaaatactgtgtcagtaagtgtgaaagtatcctgcagatgtttgtaatgcaagca
tcaagctcagtaattggacctgaagcttccaaagctactagtaaggagatgcctgttgag
ctacttcgtgcaagccttcctcatacaaataaacagcaacgccagatgctgcttgatttt
gctcagagatccatgccggtaactggtttcaacccccctggtgctagtggtgggcacgtc
acttcagaatctgtccctggttga
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