KEGG   Phragmites australis (common reed): 133908922
Entry
133908922         CDS       T10575                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    133908922
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:paua04121]
    133908922
   03036 Chromosome and associated proteins [BR:paua03036]
    133908922
Enzymes [BR:paua01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133908922
Ubiquitin system [BR:paua04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133908922
Chromosome and associated proteins [BR:paua03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     133908922
    Noncanonical PRC1 (PRC1.1)
     133908922
    Noncanonical PRC1 (PRC1.3/1.5)
     133908922
    Noncanonical PRC1 (PRC1.6)
     133908922
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-RING_4 zf-C3HC4_4 zf-RING_6 zf-UDP zf-rbx1 zf-Nse TRAF3_RING zf-RING_11 zf-C3HC4_5 zf-RING_10 ZNF512_C2HC DUF4672
Other DBs
NCBI-GeneID: 133908922
NCBI-ProteinID: XP_062207128
LinkDB
Position
2:complement(41501032..41508835)
AA seq 480 aa
MPAQKRRLPSPSSKPREHVAAPGAAAGGGGVGEGGGGLRPLPSGGAAKRRLTDPKPQREL
EDDSDAEDGGGGPDGDSESSQSDDGGNDEFILVKLAEIRKEVQCPICLGIIRKTRTVMEC
LHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAF
GEEEKTRNKKIQETIEGTSRRQTEAIGKKRTTAKATATDFARKYKRNMRTRGRGKTIAPD
IAPTGSDDEDREEENANDATKELSSADDRSPDLRQKRCRKRSASQASPARTIGSGEHGFE
ENDDLVNAKEILATSPLRGEMLAWGKNGTRSQTRHGSSAGSNGRMAKGGRIAKLVDHLRT
TDEMDKEFYLYIVLLPLNGQSIPNLEKPYLSCRPTLSIRHLVQFIALQLSRRVEELEIYI
RMDRHHGSVSSKGSITGEAVLRPFDGLERLREDKLLSELYPSFTSSSGDLELLYALKTQD
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgcccgcgcagaagcgccggctcccgtctccgtcttcgaaaccccgcgagcacgtcgcg
gctcccggcgctgccgccggcgggggaggcgtaggagaaggaggaggaggactccggccg
ctgccgagcgggggcgccgccaagcggaggttgactgacccgaagccgcagcgcgaactc
gaagacgattcggacgcggaggatggcggcggcggccctgacggcgacagcgagtcctcg
cagagcgacgacggcggcaacgacgagtttatactagtgaaattagcagaaatacggaag
gaggtccaatgtcctatctgtttaggcattatccggaagacaaggacagttatggaatgt
ttgcaccggttctgtagagattgcatcgataaatctatgcggctaggaaataatgaatgc
ccagcatgtcgcactcattgtgcaagcagacgttctttaagggatgatcctaattatgat
gcgctgattgcagccttatatccagatattgataagtacgaggaagaggaacttgctttc
ggtgaagaggagaagactaggaataaaaagattcaagaaaccatcgagggaacatctcga
agacagaccgaggcaattggtaagaagcgtaccacggcaaaagctactgccactgacttt
gcaaggaagtacaagagaaatatgcgaacacgggggaggggtaaaaccattgctcctgat
attgcccctactggctctgatgatgaggatagagaagaagaaaatgccaatgatgccacc
aaagagctgtcttctgctgatgatcgttctccagatttaaggcagaaaagatgtaggaag
aggtctgcatcgcaagcttcacctgctagaaccattggcagtggtgaacacggctttgag
gagaacgatgatttagttaatgcaaaagaaattttggccacctctccgctgcggggagag
atgcttgcatggggcaaaaatggtacacggagccaaactcgacatggaagttctgctggt
tcaaatggcaggatggcaaagggtggacgcattgcaaagttggtggatcaccttcgtact
actgatgaaatggataaggagttctacttgtatattgttctccttcctctcaatggacag
agcatacctaacttggaaaagccctatctaagttgtcgaccaaccttgtccattcgacat
cttgtacagttcattgctcttcagttgtctcggcgagttgaagaacttgagatatacata
aggatggaccgccaccatggaagtgtttcctcgaagggttccattacaggtgaggcagta
ctgcgtccatttgatggcttggaaaggttgagggaagataaacttctttcggagctttac
ccttcatttacctctagtagcggcgatctggagttattgtatgctttgaaaactcaagac
tag

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