KEGG   Phragmites australis (common reed): 133909211
Entry
133909211         CDS       T10575                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
paua  Phragmites australis (common reed)
Pathway
paua03018  RNA degradation
paua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133909211
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133909211
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133909211
   03041 Spliceosome [BR:paua03041]
    133909211
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133909211
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133909211
Spliceosome [BR:paua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133909211
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 133909211
NCBI-ProteinID: XP_062207529
LinkDB
Position
1:complement(10446112..10450143)
AA seq 146 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGDIGAKPGGRGIGRGQDDG
GKGGGGRGRGGVGGKGGNKGGGRGRG
NT seq 441 nt   +upstreamnt  +downstreamnt
atgcttcccctctcgctcctcaagaccgcccagggccatcccatgctcgtggaactgaag
aacggggagacgtacaacgggcatctggtcaattgtgatacttggatgaacatccacctt
cgggaagttatttgcacctcaaaggatggtgacaagttttggaggatgcctgagtgttac
atacgcgggaacaccatcaagtatcttcgagttcctgatgaggtgattgacaaggtccag
gaggaaacttccaagagccgatcagataggaagccaccaggtgttggccgtggaagagga
agaggagatattggtgctaaacctggaggccggggaatcgggcgtggccaagacgatggg
ggcaaaggtggtggtggccgtggaaggggtggagttggtggtaaaggtggtaacaaaggt
ggaggccgtggccgcggctga

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