Phragmites australis (common reed): 133909211
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Entry
133909211 CDS
T10575
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133909211
09123 Folding, sorting and degradation
03018 RNA degradation
133909211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133909211
03041 Spliceosome [BR:
paua03041
]
133909211
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133909211
mRNA degradation factors
5'-3' decay
Lsm complex
133909211
Spliceosome [BR:
paua03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133909211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
133909211
NCBI-ProteinID:
XP_062207529
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All DBs
Position
1:complement(10446112..10450143)
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AA seq
146 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGDIGAKPGGRGIGRGQDDG
GKGGGGRGRGGVGGKGGNKGGGRGRG
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctcgctcctcaagaccgcccagggccatcccatgctcgtggaactgaag
aacggggagacgtacaacgggcatctggtcaattgtgatacttggatgaacatccacctt
cgggaagttatttgcacctcaaaggatggtgacaagttttggaggatgcctgagtgttac
atacgcgggaacaccatcaagtatcttcgagttcctgatgaggtgattgacaaggtccag
gaggaaacttccaagagccgatcagataggaagccaccaggtgttggccgtggaagagga
agaggagatattggtgctaaacctggaggccggggaatcgggcgtggccaagacgatggg
ggcaaaggtggtggtggccgtggaaggggtggagttggtggtaaaggtggtaacaaaggt
ggaggccgtggccgcggctga
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