Phragmites australis (common reed): 133909428
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Entry
133909428 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133909428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133909428
03009 Ribosome biogenesis [BR:
paua03009
]
133909428
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133909428
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
U1 related factors
133909428
Complex B
133909428
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Helicases
133909428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
133909428
NCBI-ProteinID:
XP_062207840
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Position
2:complement(48293968..48298275)
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AA seq
571 aa
AA seq
DB search
MNPHDLRFADPSSYHDRRSDLSVAPMVAPPAPMAAANPYAGAYPLAPAAPAASAGGDYPR
FGQGGRGRGGGGWSGRGGGGGGGYGGGGRGGRGRDGLDTLALPKPDFRSLIPFEKNFYVE
CPSVQAMSEAEVAEYRRLRDITVEGRDVPKPVRYFQEANFPDYCMLAIAKSGFVEPTPIQ
SQGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAV
QIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDLLEAGYTNLRR
VTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVEALARQFLQNPYKVI
IGSLDLKANHSIQQIVEVISDHEKYPRLSKLLADLMDGSRILIFFQTKKDCDKITRQLRM
DGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLE
DYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKVLLEAGQVVNPVLESMSKSANSMGG
GNFRSRGRGGFGNRGHISGSNTFPLRGRRPY
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaacccccacgacctccgcttcgccgacccttcctcgtaccacgacaggcgcagcgac
ctgtccgtggctcctatggtcgccccaccggcccccatggcggcggcgaacccttatgcc
ggtgcgtatccgctcgcgcccgccgcgcccgcggcctcagcgggcggagactacccgcgc
ttcggccagggcggcagaggccgtggtggaggcggttggagtggcaggggcggtggcggt
ggcggtggctatggaggtggtggtagaggaggtcgcgggagggacgggcttgacacgctc
gccctgccaaaaccggacttccggagccttataccgtttgagaaaaacttctatgtggag
tgcccctctgtgcaggccatgtcggaggcggaggtggcggagtaccgacgcctccgggat
atcacggtcgagggccgggatgtgcccaagccggtccggtacttccaggaagccaacttc
ccagattactgcatgctagcgattgccaagtccggatttgtggagccaacgcctattcag
tctcaaggttggcctatggctctgaagggtagggacctgattggtattgcacaaacaggt
tcagggaaaacactatcttatctgctacctgggttggttcatgttggtgcacagcctcgg
ctagagcaaggtgatggcccaattgtattaatcctcgccccaacaagagaactggctgtt
caaatacaggaagaatctacaaaatttggatcatactcaagaactagaagcacatgtgtc
tatggtggtgcaccgaagggtccacaaatacgtgaccttaggagaggagtggagattgtc
attgcaacacctggtcggttgattgatctgctggaagctggttacacgaacctacgtaga
gtgacataccttgtgctggatgaggcagaccgcatgctagatatgggttttgagccccaa
attcgaaaaatagtgggacagatccggccagaccggcaaaccttgtattggagtgccaca
tggcctagagaagtggaagccttagccagacagtttctgcaaaatccttacaaggtaatc
ataggatcacttgatcttaaagctaatcattccatacaacaaatcgttgaagttatttcc
gatcatgaaaagtatcccagactcagtaagctcttggctgatctaatggatgggagccgc
atcttgatatttttccaaacaaaaaaggactgtgacaagatcactcgacaacttagaatg
gatggatggcctgcgttatctatacatggtgataaagctcaagctgaaagggactatgtt
cttgcagagtttaagagtggcaagagccccataatggctgccacagatgtagcggcacgt
ggtcttgatgtgaaggatataaagtgcgtgataaattatgattttccaacaactcttgaa
gattatattcacaggataggtcgaactggccgtgctggtgctagcggaactgcatttact
tttttcacacatgcaaatgcaaagttctcaaggaatctggtcaaggttttgctggaagcc
ggccaggttgtgaatcctgtactagaatccatgtccaagtctgccaattcaatgggagga
ggcaatttccgttcaaggggcagaggtgggtttggtaaccggggtcatatatctggatcg
aatacctttcctttacgaggaagaaggccatattga
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