Phragmites australis (common reed): 133909605
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Entry
133909605 CDS
T10575
Name
(RefSeq) flowering time control protein FY-like
KO
K15542
polyadenylation factor subunit 2
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133909605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133909605
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133909605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_IFT122_1st
eIF2A
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Vps41
WD40_RFWD3
NBCH_WD40
Tricorn_2nd
Beta-prop_HPS5
B-prop_COPA_B_2nd
WD40_like
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
133909605
NCBI-ProteinID:
XP_062208094
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All DBs
Position
2:complement(50482877..50489866)
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AA seq
711 aa
AA seq
DB search
MMQPQQSQQQQPPPQSGGGGEFYRGPPTRQLSAASSTNMPPDYAAHPGPPPQQHQPPYDA
YGDNFGAKRMRKPVQRRTVDYTSSVVRYVQARMWQRDARDRVTLQPTPAAVLDMLPSVAY
PDNPSTSFAAKFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ
AHDQAVRSMVWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRTGLKF
CSCSDDRTVKVWDFARCQEEKSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDAKSGR
ELRSFHGHKNIVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTALAWH
PFHEEYFVSGSFDGAIFHWLVGHEIPQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATR
FWCRNRPGDLTRDRYNSGQTQGYGDQHSAFGARAMGGFQMPEAPTTPGPFAAGLSRNEGT
IPGIGAAMPLIGQSLDGSDQGASIPGLPPGPPPLPPGPHPSLLAPGQQQQYQQMPQQQHP
QFPQQLTSRPPPPNMPQLQPPAHMLPHPQGSRPPLPQLPPMGGPSMPSPVNPPLPPMPHP
MAMQGSQNQMMPQLPQHMMGLNQMHPGPVPPGNVPPMGGFQNGMGNIQGASGSSGMQGFP
MGGMYNRPQGQMAPQGQMTSIPGLSSYQGMGNVGHTPPPPQHLPPRGSTPQ
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagccgcagcagtcgcagcagcagcagccgccgcctcagtccggcggcggcggg
gagttctaccgcggcccgccgacgcggcagctctcggcggcgtcctccaccaacatgccc
cccgactacgctgcgcacccgggcccgccgccgcagcagcaccagccgccgtacgatgct
tatggggacaattttggtgctaaaaggatgcgtaagcctgtccagcgacgaacagtggac
tacacaagcagtgtcgtccgttatgttcaagctcgcatgtggcagcgggatgcaagggac
agagtcacattgcagccaactcctgctgctgtcctggatatgttgccatctgtcgcatat
ccagacaatccctccacaagttttgctgccaaatttgtacattcttcaatcaacaagaat
cggtgctctattaatcgtgtcttgtggactcctacaggccgtcggcttattactggatca
cagagcggtgaattcaccctatggaatgggcaatcttttaactttgaaatgattcttcag
gctcatgaccaagctgtgagatcaatggtttggagtaacaacgaaaactggatggttaca
ggtgatgatggtggtgcaatcaagtattggcaaagtaatatgaacaatgtcaaagtgaat
aaaacagctcacagagaatcagttcgcgacttaagtttttgtagaacaggcttgaagttc
tgttcctgctctgatgacagaactgtgaaggtttgggactttgcgagatgccaagaagaa
aaatcattaaccggccacggttgggatgttaaaagtgtcgattggcatcccacaaagtct
ttattggtttcaggtggtaaagactatcttgtgaaactctgggatgcaaaaagtggtaga
gagctacgctcattccatggacataaaaatattgtgcaatgtgtaaagtggaatcagaac
gggaactgggtactgactgcctcaaaggatcagataattaagctgtatgatattagatcc
atgaaagagcttgaatccttccgcgggcacaacaaggatgtaactgcgttggcatggcac
ccatttcatgaagaatactttgttagtgggagctttgatggagcaatctttcattggttg
gtcggccatgaaattccacagatagaaataaataatgcacatgacaatagcgtgtgggat
cttgcttggcatcctgtaggctatctactttgcagtgggggcaatgatcatgctacaagg
ttctggtgtagaaacagacctggtgatcttacccgcgatagatacaacagtggccagaca
caaggttatggtgatcaacattctgcttttggtgctcgtgctatgggtggattccagatg
cctgaagctccaacaacacctggaccatttgctgctggattgtcgcgaaatgaaggcaca
attcctggcattggggctgcaatgcccttgataggccaatctcttgatggatcagatcaa
ggagcatctattccgggtcttccacctgggccacctcccttgccaccaggtcctcatcca
tctcttctagctcctgggcagcagcaacaatatcaacagatgcctcagcagcaacatccc
cagtttccgcaacagttaacttctcggccgccaccgccaaatatgccccaattgcagcca
ccagcacacatgcttccacatccacaaggatctcgacctccacttccccagcttccacca
atgggcggaccatcgatgccgtcaccagtgaacccaccactaccacctatgcctcaccct
atggcaatgcaaggttcgcagaaccagatgatgcctcaattgccgcagcacatgatgggc
ctaaatcagatgcatcctggtcccgttcctcctggcaatgtacccccaatgggtggcttc
caaaatgggatggggaacatacaaggcgcttcaggttcatctggcatgcaaggttttcct
atgggtggcatgtacaaccggcctcaaggacaaatggctccacaagggcaaatgacatcc
attcctggtctaagctcttaccagggaatgggcaatgttggccatacaccaccaccacca
cagcatctgcctccacgtggttcaacaccacagtaa
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