Phragmites australis (common reed): 133911182
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Entry
133911182 CDS
T10575
Name
(RefSeq) serine/arginine-rich splicing factor SR30-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133911182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133911182
Spliceosome [BR:
paua03041
]
Common components
Common spliceosomal components
SR proteins
133911182
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_YTH1
RRM_3
DUF4299
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
133911182
NCBI-ProteinID:
XP_062209376
LinkDB
All DBs
Position
1:16026012..16033532
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AA seq
263 aa
AA seq
DB search
MKTMSRRNSRIIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRD
ADDAIYGRDGYNFDGYRLRVELAHGGRGQSYSYDRPSSYSSVHRGGVSRRSDYRVMVTGL
PSSASWQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIKKLDESQFRNAFS
RACIRVREYDAISRSRSRSRSYSRSPSYSRSRSPKYVSRSPSPVHERSLSRSQSPASSPS
RGRSVSRSRSRSLSPSRSPVRSD
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaatgagcaggcgcaacagccgcatcatctatgtaggcaacctccctggggac
atccgtgagagggaggtagaggatctcttctacaagtacggaaggattttggatatcgac
ttgaagattcctccaagacctcctggttatgcttttgttgagtttgaggatccccgtgat
gctgatgatgcgatctatgggcgtgatgggtataactttgatggctacaggttgcgggtt
gaattagctcatggtggaagaggtcagtcttactcttatgatcgtccaagcagctatagc
agtgtacaccgtggaggtgtttctaggcgctctgattatcgcgttatggtcactggttta
ccttcatcagcatcgtggcaagatctgaaggaccatatgcgacgcgccggcgatgtctgt
ttctctgatgtataccgtgaggcgggagaaactattggtattgtggattatacaaactat
gacgacatgaaatatgcgattaagaagcttgatgaatcgcagttcagaaatgcattttca
cgggcttgtatcagagtgagggagtatgatgctatatcacgaagcaggagccgtagtcgc
tcgtactcgagaagtcccagttacagcaggagcaggagtccaaaatatgtttctcggtca
ccctcgcctgtgcatgaaagatccctatcaaggtctcaatcccctgcttcttctccttct
cgtggaagatctgtgagcagaagcaggagcaggagcttatccccttctcgttctcctgtg
agatctgattga
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