Phragmites australis (common reed): 133911567
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Entry
133911567 CDS
T10575
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
paua Phragmites australis (common reed)
Pathway
paua04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133911567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133911567
03009 Ribosome biogenesis [BR:
paua03009
]
133911567
04131 Membrane trafficking [BR:
paua04131
]
133911567
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
paua04147
]
133911567
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
133911567
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
133911567
Membrane trafficking [BR:
paua04131
]
SNARE
SNARE associated proteins
Others
133911567
Autophagy
Aggrephagy
Other aggrephagy associated proteins
133911567
Exosome [BR:
paua04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133911567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_33
AAA_5
CDC48_2
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
Parvo_NS1
AAA_18
ATPase_2
IstB_IS21
ABC_tran
AAA_7
Vps4_C
Viral_helicase1
NB-ARC
TsaE
NACHT
AAA_24
AAA_lid_PRS2_C
Zeta_toxin
DUF815
ResIII
Cytidylate_kin2
Motif
Other DBs
NCBI-GeneID:
133911567
NCBI-ProteinID:
XP_062209846
LinkDB
All DBs
Position
3:2914435..2917179
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AA seq
792 aa
AA seq
DB search
MADDRAASSAPAVTKKKAANRLVVEEATTDDNSICMLNPATMDKLSIFHGDVVLLKGKRR
RDTVCIAMSDEHCEESKIKINKAVRSNLRVRLADVVSVHVCHDAKYGARVHILPVDDTVE
GLTGDLLEAYLKPYFLHAYRPVRKGDLFLVRGGMRSVEFKVMDIEPAAEYCIVALDTEIF
CDGEPVKREDEERLDDVGYDDVGGMRKQLGQIRELVELPLRHPQLFRSIGVKPPKGILLY
GPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFVD
EIDSIAPKREKTHGEVEKRIVSQLLTLMDGLKARAHVIVMGATNRPNSIDPALRRFGRFD
REIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLEVVAKDTHGYVGADLAALCTEAALQCIR
EKMDVIDLEDETIDAEILNSMAITNDHLKIALAGTNPSALRETVVEVPNVSWADIGGLEG
VKRELQETVQYPVEHPDKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG
PELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSVGDAGGAGDRVLNQL
LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRHQIFKACLRKS
PVASNVDLGALAKFTAGFSGADITEICQRACKYAIREDIEKDIERQRKSKENSEDTEVDC
TEEPAQIKVPHFEESMKYARRSVSDADIRRYQAFAQTLQQSRGFGSEFRFSTHSKPAEPA
VTANADEDDLYN
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgacagagccgcttcctctgctcccgccgtcaccaagaagaaggccgcgaac
cggctggtggtggaggaggcgaccacagacgacaactccatctgtatgctcaacccggcc
accatggacaagctctccatcttccacggcgacgtcgtcctgctcaaaggaaagcgccgc
cgcgacacggtctgcatagccatgtcggacgagcactgcgaggagagcaagatcaagatc
aacaaggcggtccgctcgaacctccgcgtgcgcctcgccgacgtcgtgtccgtgcacgtg
tgccacgacgccaagtacggggcgcgcgtccacatcctccccgtcgacgacaccgtcgag
ggcctcacgggggacctcttggaggcgtacctgaagccttacttcctccacgcataccgc
ccggtccgcaagggcgacctcttcctcgtgcgcggcggcatgcggagcgtcgagttcaag
gtcatggacatcgagcctgcggctgagtactgcatcgtcgcgctcgacacggagatcttc
tgcgacggcgagccagtgaagcgtgaggacgaggagaggctggacgacgtcggctacgat
gacgtcggaggcatgcgcaagcagttgggccagatcagggagctcgtcgagctgcctctc
aggcacccgcagttgttcaggtccattggggtcaagcctccaaaaggcatccttttgtac
ggccctcccggctccggcaagactcttatcgctcgtgctgtggccaacgagacaggtgca
ttcttcttctgcatcaacgggccggaaatcatgtcgaagatggccggagagagcgagagc
aatttgaggaaggcgttcgaggaggccgagaagaacgcgccatccatcatcttcgttgac
gagatcgactcgatcgccccaaagagggagaagacccacggggaggttgagaagcgtatt
gtctcccagctgctcacgctgatggacgggctgaaggcacgcgcgcatgttatcgtcatg
ggcgcgacgaaccgcccgaacagcatcgaccctgctttgagacggttcggcaggttcgat
cgcgagatcgacattggcgtgccggacgaggttggtcgccttgaggtgttgcgtattcat
acaaagaacatgaagctcgctgaggatgtgaacctggaggttgtggccaaggacacgcat
gggtatgttggtgctgacctcgccgccctctgcactgaggctgctctgcaatgcataagg
gagaagatggacgtgattgacctagaggacgagacaatcgatgcagaaattcttaactcg
atggccatcacaaatgaccatctcaagattgctcttgctggcaccaatccatctgcgcta
cgtgaaacggtggtcgaggtgcccaatgtcagctgggcggacatcggaggcctcgagggc
gtcaagagggaactgcaagaaacagttcagtacccggtggagcatccggacaagttcgaa
aagtttggcatgtccccttccaagggcgtgctgttctacggaccaccgggttgcggcaag
actcttctcgcaaaggcgatcgcgaatgaatgtcaagcaaactttatcagcgtcaaaggc
cctgagctgctgaccatgtggttcggcgagagcgaggccaacgtccgtgagatctttgac
aaggcgcgtcagtctgctccgtgcgtcctattcttcgatgagctcgattcaatcgcgacg
cagaggggcggcagcgtgggagacgctggaggtgctggggacagggtcctcaaccagctg
ctcaccgagatggacggcatgaatgcaaagaagacggtgttcatcatcggcgccaccaac
cggccggacatcatcgatcccgcgctgctccgtcctggccgtctcgaccagcttatctac
atccccttgcccgacgaggcttcgcgccaccagatctttaaggcgtgcctgaggaagtcc
cccgttgcgagcaacgtcgaccttggcgcgctcgccaagttcacggcgggcttcagcggt
gcggacattaccgagatttgccagagggcgtgcaagtatgccatccgtgaagacattgag
aaagacatcgagcggcaaaggaagtccaaggagaactcggaagacacagaggtggactgc
accgaggagccggcacagatcaaggtgcctcactttgaggagtccatgaagtacgcgcgg
aggagcgtcagcgacgcggacatccggaggtatcaggcgttcgcgcagacgctgcagcaa
tcgaggggtttcggcagcgagttccgcttctcgacgcattccaaaccggctgaacctgct
gtgacggccaacgccgacgaggatgatctttacaactga
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