Phragmites australis (common reed): 133911876
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Entry
133911876 CDS
T10575
Name
(RefSeq) pre-mRNA-processing factor 39-1-like
KO
K13217
pre-mRNA-processing factor 39
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133911876
Spliceosome [BR:
paua03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
133911876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
133911876
NCBI-ProteinID:
XP_062210308
LinkDB
All DBs
Position
3:complement(7278337..7288795)
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AA seq
784 aa
AA seq
DB search
MEQDQNVATRVDSGSAEPGAAAFDPASANPDANAYSQNPSYVIQSDGALVAGESVVAPDG
GAQGDDASAYATEHVAFNGTADYQSAGLTENGAAAANEMGEPVPEPSYEDAVLSAEEVRL
WNVVMANCLDFNAWTTLIDETEKNAESNILKIRKVYDAFLAEFPLCFGYWKKYADHEGRL
DGVNKVIEVYERAVLSVTYSVDIWYNYCQFAISTYDDPDIIRRLFERGLAYVGTDYRSNL
LWDEYIKYEESLQAWSHLAVIYTRILEHPIQQLDRYFNCLKELASTRNLSEILTAEEASA
YGVTSEDIAQALDGEAHPDGVDKSAQPEISTSTEAENLAKYVSMREEMYKKAKEYESKII
GFELGIRRPYFHVKPLDNPELENWHNYLDFIEKEEDINKVIKLYERCVIACASYSEFWIR
YVQCMEDKGSLELANNALTRATHVFVKKQPEIHLFSAHFKELNGDVSGARVEYQHLYSEL
CPGFLEAIVKHSNMEHRLGDKESACSVYEKTIAAEREKEQSQLLPTLLIQYSRFLFLAIR
DLEKARETITALHEQFNVTKLILEATIHLESLFPCEKRIEFLDSLVEKFLTSDPSQVEVA
SLGDKEEISSIFLEFLDLFGDAKSIKKALNRHTTLFSCKRSILSSKKRKADDAIVSDRDK
LAKTGGTQPGMATDPNAHNPPVWPATSEATGQQWGAAYAPQAAYPPYGTYDYSQQLPQSA
PQAAPYGAYPPTYSAQAYTQQTYAHPAAMGTAAPAPAAAPAPAPTAVYPQQPAAAQPYYG
TTYY
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggaccagaacgttgctactcgtgttgattccggcagcgcggagcctggtgct
gcggcttttgatccagccagtgccaatcctgatgccaacgcgtacagtcaaaatccgagc
tacgttattcaatctgatggggcgcttgtcgccggtgagagcgtcgttgcccccgacggt
ggagctcagggggacgatgcctctgcatatgcgactgagcacgtagcattcaatgggacg
gctgactaccaatctgcaggacttacagagaatggtgctgctgccgcaaacgagatgggc
gagccggttcctgaaccatcctatgaggacgctgttctttcagcagaagaggttaggttg
tggaatgtcgtcatggcaaattgtttagacttcaatgcttggaccacacttattgatgag
acagagaaaaatgctgagagcaatattttgaagatacggaaggtgtatgatgcatttctt
gcagaattccctctttgctttggatattggaagaaatacgcagatcatgaaggccggctt
gatggtgtcaataaagttatagaggtgtatgaacgagcagttctttcagtaacttattca
gtggacatttggtataactactgtcagtttgcaatttcaacatatgatgacccagatatc
atccgaagactgtttgagcggggtttggcatatgttggaacagattaccgttccaatctt
ttgtgggatgagtacattaagtatgaagaatcgctgcaggcatggagtcatctagccgtg
atatacacgaggatactagagcatcctatacagcagcttgaccgttactttaactgcttg
aaggaattggcttcgacacggaatttgtcggaaatacttactgcagaagaagcttccgca
tatggtgttacatctgaggacattgctcaggctcttgatggggaggcacatcctgatggt
gtcgataaatctgctcaacctgaaatttcaacttcaacagaagcagagaacctggcgaaa
tatgtatccatgagagaagagatgtacaagaaggccaaagagtatgaatctaagattatt
ggttttgagctaggtattagaagaccatattttcacgtcaagcctcttgacaatccagaa
cttgaaaattggcataactatcttgattttatcgagaaggaagaagacattaataaggtt
atcaaattgtacgaaagatgtgttattgcatgtgctagttattcagaattctggatccgg
tatgtgcaatgtatggaggataaaggaagcctagaactagcaaacaatgccctgactcgt
gccactcatgtgtttgtcaagaagcagccagagatccatctatttagtgcacactttaag
gagcttaatggagatgtttctggagcacgtgtagaatatcagcatctttactcggaacta
tgtcctggctttctagaggccattgtgaaacattctaatatggagcaccgactgggagat
aaagaatctgcttgttcagtttatgagaagaccattgctgctgaaagggaaaaggagcag
agccagctcttgccaacactgctgattcaatactcacgtttcttatttttggctatccga
gacttggaaaaggcaagggagaccataactgcattgcatgagcagttcaacgtgacgaaa
ctaattctcgaggctaccatccatctagagtcactatttccatgtgaaaagcgtattgaa
tttttagattcccttgtggagaagttccttacatctgatccatctcaagtggaggtggca
agtctaggtgacaaagaagaaatatcttccatatttttagagtttttggatctctttggg
gatgcaaagtcgatcaagaaggctttaaatcggcatacaactcttttctcatgtaagaga
agcattctgtcatcaaagaaacgaaaagcagatgatgctattgtgtcagacagagacaaa
ttggctaaaactgggggaactcagccaggcatggcaactgatccaaatgctcataatcct
ccagtttggcctgcgacatctgaagcaacagggcaacaatggggagctgcttatgcaccg
caggctgcgtatcctccatatggaacttatgactacagccagcaactgcctcaatctgct
cctcaagcagctccttatggtgcatatcctccaacatactctgctcaggcctacacacaa
caaacctacgcacatcctgcagcaatggggacggcagcaccagcgcctgcagcggcgcca
gcaccggcccctacggcagtttaccctcagcaacctgcggcagctcaaccttactatggc
acaacatactactga
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