Phragmites australis (common reed): 133912014
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Entry
133912014 CDS
T10575
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133912014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133912014
03041 Spliceosome [BR:
paua03041
]
133912014
03032 DNA replication proteins [BR:
paua03032
]
133912014
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
133912014
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
Sm proteins
133912014
U2 snRNP components
133912014
Complex B
U1 snRNP components
133912014
U4/U6.U5 tri-snRNP components
133912014
Complex C
U2 snRNP components
133912014
DNA replication proteins [BR:
paua03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
133912014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6897
Motif
Other DBs
NCBI-GeneID:
133912014
NCBI-ProteinID:
XP_062210523
LinkDB
All DBs
Position
3:9521532..9530107
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AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQL
EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARAAAGRGGG
PIGRGGAPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagcctggggatcccggtgaagctgctgcacgaggcggcggggcacgtggtg
acggtggagctcaagaccggcgaggtgtaccggggatccatggtcgagtgcgaggacaac
tggaactgccagctcgagaacatcaccttcaccgccaaggatgggaaggtgtcgcagctg
gagcacgtcttcatcagaggaagcagagtgaggtttatgattataccagatatgctcaag
aacgcccccatgttcaaacgcttggaagcaaggattaggggcaaaggatcagctattgga
gttggtcgtggccgtgcagttgcaatgcgtgctcgggctgctgctggtcgtggtggtggt
cctattgggcggggcggcgcaccacctgtgaggaggtag
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