KEGG   Phragmites australis (common reed): 133912341
Entry
133912341         CDS       T10575                                 
Name
(RefSeq) uncharacterized protein LOC133912341
  KO
K11797  PH-interacting protein
Organism
paua  Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:paua00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:paua04121]
    133912341
Ubiquitin system [BR:paua04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     133912341
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd WDR55 Beta-prop_SCAP NBCH_WD40 Beta-prop_WDR90_POC16_2nd Bromodomain Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N VPS8_N Beta-prop_HPS5 WDR90_beta-prop_4th Auxin_resp
Other DBs
NCBI-GeneID: 133912341
NCBI-ProteinID: XP_062211002
LinkDB
Position
3:complement(14554048..14572525)
AA seq 1699 aa
MSFRKHQPSDNAAPIGMGPLDCPSQELEKVNPVNSVMSGDVASMAGADIDMREVYFLIMH
FLSHGPFKRTFGELCNELLEHQLLPRRYHAWYSRGGFHSGEQNDDGRSLPLGYLKLVERY
PHIGKDHLVKLLKQLMVSSCHPHSLIGGGSPNASDVPTLLGSDSFSLLASDRGRQDKETP
SLPSYLRWPHIQADQVHGLSLREIGGFTKHCRAPSVRASCYAIAKPSTLVEKMQIIKRLR
GHQNAVYCATFDRTGRYVITGSDDRLVKIWAIETAFCLASCRGHEGDITDLAVSSNNAVV
ASSSNDFIIRVWRMPDGMPISVLKGHTGAVTAIAFSPRPGAAFQLLSSSDDGTCRIWDAR
YSQQPPRIYIPKPPDVAPGKSGDASSSAAQVQPTNHQILCCAFNANGTVFVTGSSDTFAR
VWNACKSSSEEHDQPNHEMDLLSGHENDVNYVQFSGCTVASRSFSSDSSHTTKEENNLKL
RNSWFTHNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMAPQPPRGGPRQR
YQPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLIGHKESTFVLDVHPFNP
RIAMSAGYDGKTIIWDIWKGKPVQIYETGHFKLVDGKFSPDGTSLILSDEIGQIFIIGTG
QGESQKDAKYDQFFLGDYRPLIRDTSGNVIDQETQLIPHRRNMQDLLCDSGMIPYPEPFQ
SMYQKRRLGTLGLEWRPPAVNFAVGPTYNATTGEYQVIPIIDPDRWEPLPEITDFVELEP
ENEVISDDTDSEYNADEYTSEGEQEILSGDSSGASYSSAEIDANNPTNAAHIRRSRRKKK
KTDADLVTSSGRRVRKKKLDEHDVATVPRPHRGRKYRNGRSSKRKRSPKSRGLRPQRRAA
RNALNFLSKMGGASTEEDEDDSEGSFSDSELNTDSTEAERLERNGQLRIGREIPQYDSED
VTQPFQLTETKRNSGSSRKLVLRIPRRDLKIEFPSGSRKAECSTQDKAAISLAPVNHKSV
EPELTSEPGYSSACKDELITEGVQTETSDLHNVSAVHSNNSIKWGEVKMRSSKRCKFSDP
AGVWSTSNNAVSQDVDESGSQEMNHEYGDGIQQSFEQNVQEIEPAINLDNIEENQSTEGY
SVENLPDKEKITNNNDTHADGANNTEQVNNNSQPASLKLKFKSRGFADGASLSDKSRSTA
VGNFTSSKHGRGSVQHDEDSAINQHNSAGFLTVSRSFQDCTDKSTGLHDSKKLQLDSPKT
YTAVYKRSRPNNRKKMDSDEYANEDSTSISNDDGGYQPPEYSPVTAASSRSRRSARRSYA
YTGDGTMEGDISQVKDSYGSHEASTSGRRIATDMCDVMWRSTSKTVGLRSARNKRESCNF
PDTHPLGKRPQVSVKYSWLMLREHEDSYRYIPQLGDEVMYLGQGHEEYLEGVRSSDYCLW
NRIKGLKAVELCKIQGLDYTTFRGSGESCCKLTIEFVDGTSSIFGRKFVITLPELVNFPD
FLVERTRYEAAIERNWTHRDKCKVWWRDEGEQGGSWWEGRVLAVKPKSPDFPESPWEKYV
IQYKNDGSDHPHSPWELHDVGNLWVPWKHPHINLGIRNKLLSEMEKLQEMSHRNQDRYGV
LKLDKVAEKSDFTNRFPVQFSIEVIKTRLENNYYRTLEAVQHDATVMLANAESYFSKSTD
MTKKIRRLSEWIKQTFSSL
NT seq 5100 nt   +upstreamnt  +downstreamnt
atgtctttcagaaagcaccaaccttctgataatgcagcccccattggtatggggcccctg
gattgtccaagtcaggaacttgagaaggttaatcctgtgaattcagtgatgtcaggcgat
gttgcatccatggctggtgctgatattgatatgagagaagtttactttctcattatgcat
tttttatctcatggtccatttaagcggacctttggagaactgtgcaatgaactcctggag
catcaactgctacctagaagatatcatgcctggtattcacgtggtggtttccatagcggt
gaacaaaatgatgatggcagatcactccctttgggttacctaaagttggtcgagaggtac
ccccacattggcaaagaccacctggtgaagcttttaaagcaactgatggttagttcctgc
cacccacacagtttgattggaggaggttctccaaatgcttctgatgtccctacacttctt
ggctccgactccttttcacttcttgcatctgataggggcaggcaagataaggaaactccc
agtctgccgagttatctccgttggccgcacatacaagctgatcaagttcatggtctaagt
ttaagagagattggtggttttactaagcattgtcgagctccgtctgtacgtgcatcatgc
tatgccattgcgaagccatctacccttgtcgaaaagatgcaaattataaagagactgaga
ggacatcaaaatgctgtgtattgtgctacttttgatcgcacaggacggtatgttattacc
ggttctgatgaccgccttgttaaaatatgggcgatagaaacagcattctgtctggctagc
tgccggggtcatgaaggtgatattactgatctcgcagtgagttccaataatgctgtggta
gcatcttcatctaatgatttcattattagggtgtggcgtatgcctgatggaatgccaatc
tcagtgctcaagggacatacaggggcagttactgctattgcatttagtccaaggccaggt
gctgctttccagctgttgtcatcatcagatgacgggacatgcaggatttgggatgctaga
tactctcaacagcctccgcgaatatacataccaaagcctccagatgttgcccctgggaag
agcggtgatgcatcttccagtgctgctcaagttcagccaacaaatcaccaaatcctatgt
tgcgcatttaatgctaatggaactgtgtttgtcactggcagctcggacacctttgcaaga
gtatggaatgcttgcaagagttcttctgaggaacatgaccaaccaaatcatgagatggac
ctattatctgggcatgaaaatgatgtaaactatgtgcagtttagtggatgtactgtggct
tctagatctttttcatctgattctagtcacaccactaaggaagaaaataaccttaagcta
agaaattcctggttcacacataatattgttacctgctcccgtgatggcagtgcaattata
tgggttccacgatctcggaggtcacatggaaaggttggacgctggacacgtgcttaccat
cttaaagttcctccacctccaatggctcctcaaccacctcgaggcggtcctcgtcaaaga
taccagccaactcctcgtggtgttaatatgattgtttggagtctggacaaccgctttgtt
cttgctgctatcatggattgcagaatttgtgtatggaatgcttctgatgggagcttggtg
cattcattgattggccataaggaatctacatttgttcttgatgtgcatccgtttaaccct
cgcatagctatgagtgctgggtatgacggaaagacgatcatctgggatatatggaaagga
aaaccagttcagatctatgaaactgggcattttaagctagttgatgggaagttctctccg
gatggtacatcacttattctatcggacgaaattgggcaaatatttattattggtacaggg
caaggtgaatcccaaaaggatgcgaaatatgatcagttcttccttggagactatcgaccc
cttattcgagatacaagcggaaatgttatcgaccaggaaacacagcttataccgcatagg
agaaatatgcaagaccttttgtgcgactctggaatgataccatatccagagccctttcag
agtatgtaccagaaacgccggttaggtacccttggtcttgagtggcgacctcccgctgtg
aattttgctgttggccccacttacaatgcgaccacaggtgaataccaagtcatcccaatt
attgatccggataggtgggaaccacttccagagattacagacttcgttgagcttgaacca
gaaaacgaagttatctctgatgatactgattctgagtacaacgcggatgagtatactagt
gaaggagaacaggagattctgagtggtgattcctcgggtgcttcatactcaagtgcagaa
attgatgctaataaccctaccaatgctgctcatatccgcagatcaagaagaaagaagaaa
aaaactgatgccgatcttgttacttcatctggtcgacgagttaggaaaaaaaaattggat
gagcacgatgtggctacagtaccaaggccacatagaggtaggaagtataggaatggtcgc
tctagcaaaagaaaaagatcccctaaatctaggggattgcgacctcaaagacgtgctgct
cggaatgcactcaattttttatcaaagatgggaggggcttcaacagaagaggatgaagat
gactcagagggcagtttctcagacagtgaattgaacacggatagcactgaagctgaacgg
ttagaacggaatggccagctgagaattggcagagagattccccaatatgactctgaagat
gttacacaaccttttcagttaaccgaaactaagagaaattctggaagtagtagaaaatta
gtcctcaggataccacgacgtgatttaaaaattgaatttccttcgggaagcagaaaagca
gaatgctccactcaagataaagcagcgatctcacttgctccagttaatcacaaatcagtc
gagccagaactaactagcgaacctggatattcctctgcttgcaaggatgaattaataaca
gagggagtgcaaactgagacctctgatctgcataatgtttctgctgttcacagtaacaac
tcaatcaagtggggtgaggttaagatgcgatcgtcaaagcgttgcaagttcagtgaccca
gcaggtgtgtggtccacttcaaataatgctgtttcacaggatgttgatgagtcaggtagt
caggagatgaatcacgaatatggtgatggtatccagcaaagttttgagcagaatgtacaa
gaaattgaacctgcaataaatctagataacatcgaggaaaaccagagtactgaagggtat
agtgtagaaaatttgccggataaagaaaagattactaacaataatgatactcatgcagat
ggagctaataacacagaacaagttaacaataattctcagcctgcttccttgaaactaaag
ttcaagtcaagaggctttgcagatggagcaagtttatcagataaatcaagaagtactgca
gtaggaaatttcacgagctccaagcatggtagaggttctgtgcagcatgatgaggattct
gccatcaatcagcataatagtgccggcttccttactgtttccagaagttttcaggattgc
acggataaaagcactggtttacatgattcaaaaaagttgcaattggattctccaaagaca
tacactgcagtgtacaaaaggtccaggccaaataacaggaaaaaaatggattcagatgaa
tatgcaaacgaggatagcacttcaatctccaacgatgatggtgggtaccaacctccagaa
tatagtcctgttacagctgctagcagtagatcgcgaagaagcgcaaggaggtcatatgca
tacaccggtgatggtacaatggagggtgatatttctcaagtgaaagattcttatggttcc
catgaagcatcaactagtgggagacgcattgccacagatatgtgtgatgtaatgtggaga
tcaacctcaaaaactgtgggtttaaggtctgctaggaacaaaagagagagttgcaacttt
cctgatacacatccattggggaaaaggccccaggtatctgtaaaatattcgtggttaatg
ttgcgtgagcatgaagatagctaccgttatattcctcaactcggtgacgaagttatgtac
ttggggcagggtcatgaagaatatcttgaaggagtgcgatcatcggattattgcctatgg
aatcggatcaaaggccttaaagctgtagagctttgcaaaattcagggccttgattacact
actttcagaggatctggtgaaagctgctgtaaattaactattgaatttgttgatggcact
tccagcatatttggtagaaaatttgtgatcaccttgcctgagctagttaacttcccagat
tttcttgtggaaagaacaaggtatgaagctgctattgagcggaactggacccacagagat
aagtgcaaagtttggtggagggatgagggcgagcaaggaggaagttggtgggagggacgg
gtactggcagtaaaacctaaatcacctgattttcctgagagtccatgggagaaatatgtc
atacagtataaaaatgatggttctgatcacccgcatagcccgtgggaactccatgatgtt
ggcaatttatgggttccatggaaacatccacatatcaatctcggaattagaaataaactg
ttgtcagaaatggaaaaattacaggaaatgtctcacaggaatcaggatcgttatggtgtt
ttgaagttggataaagttgctgaaaagtcagattttacaaacaggtttcctgtccaattt
tctattgaggtgatcaaaacaagactagagaacaattactacagaaccctggaggctgtc
caacatgatgccacagtgatgcttgcaaatgcagagtcatacttttcaaagagcactgac
atgaccaaaaagatccgcaggctctctgagtggatcaaacaaaccttttcatcactgtag

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