Phragmites australis (common reed): 133912471
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Entry
133912471 CDS
T10575
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paua03016
]
133912471
Enzymes [BR:
paua01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
133912471
Transfer RNA biogenesis [BR:
paua03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
133912471
Prokaryotic type
133912471
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
133912471
NCBI-ProteinID:
XP_062211207
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Position
3:17446449..17456214
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AA seq
522 aa
AA seq
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MAAAAAAATSWWVLRRPISSALLARRANPGLLRTTLCISSSASATATPPPSPSPFPPDTS
ADDGGSGMRWESARKKRVVLRVGYVGTEYRGLQKQRELSVDSTIESVLESAIFKAGGILE
SNYGKLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWQNDPDGIALASFINSNLPNNV
RVFSMLPAQRNFDVRRECLYREYFYLLPAEIIGIKDGCSSEEVQEHLSEFNSILKGFEGN
HPFHNYTARAKYRKDLAGRRQRVKGAISTSKSMSSEIGMDESSSDESIASDHDEENLNVS
STIDSSASNYNCMMKDIAKLSENRLQIQARWLHEPDESDRLNASHFRDIITCSCGELQSS
SGIQFVELTICGVSFMLHQIRKMVGTSVAVKRGLLPKDIIELSLAKFSRIVLPIAPPEVL
ILRDSSFCSKNREGRIVRPGIESLNKSEEIRKGVEEFYKAALLPELAKFLDPSMPPWEEW
VENLDQFTGMPDSQLNEVREAYRIWKDDYDRVKMARKSASSI
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgccgccgccgccgcgacgtcatggtgggttctccggagacctatctcctcc
gctctcctcgcgaggcgcgcgaaccctggactcctgcgtaccaccctctgcatttcctcc
tccgcatccgccaccgccactccaccgccgtctccgtctccgtttccgcctgacacctcg
gccgacgatggaggcagcgggatgaggtgggagtctgcgcgaaagaagagggtcgtgctc
cgcgtcggctacgtcggcaccgagtaccgaggccttcaaaagcagcgggagctcagcgtg
gactcgaccattgagtcagtcttggaatctgccatcttcaaggcaggtggcattcttgag
agtaattatggaaaactgcaaaaggttgggtgggagaggagtagccgaactgataaaggg
gtacactcgttggctacgatgatctcccttaaaatggaaatccctgacagagcatggcag
aatgatcctgatggtattgctcttgccagtttcatcaactcaaatttaccgaacaatgtc
agagttttcagtatgttgcctgcacaaaggaattttgatgtaaggagggagtgcttatac
cgggagtacttctatcttctgcctgctgaaattattggaattaaagatggctgtagctct
gaggaagtgcaagagcacttgtcagaattcaacagcatattgaaaggctttgagggaaac
catccgtttcataattacactgcccgtgccaagtataggaaggatctagcaggaagacgc
caaagggtcaaaggagcaatctcgacatcgaagtccatgtcctctgaaataggtatggac
gaaagttcttctgatgagagcattgcttcagaccatgatgaagaaaacttgaatgtttcg
tcaacgattgattctagtgcatcaaactacaattgtatgatgaaggatattgccaaactt
tctgaaaaccggctgcagattcaagctaggtggctgcatgagcctgatgaaagtgataga
ttaaatgcttcacatttcagagatatcatcacctgctcctgtggagagttgcagagttca
tcaggcattcaatttgtggaattgaccatatgcggagtatcgttcatgctacatcagatc
cggaagatggttggaacatcagtggcagtgaagcgtggattactacccaaagatatcata
gaactgtctcttgcaaagttctcaagaatcgttctaccaatagcacctccggaagttctg
atccttagagatagcagtttctgctcaaagaaccgggaaggaagaattgttcgccctggg
atcgagtcattgaacaaatcagaagaaataaggaagggggttgaggaattctacaaagca
gctcttttgcctgagctagcaaaattcttggatccatctatgcctccatgggaagaatgg
gtggagaacttggaccaattcactggcatgccagattcgcagttgaatgaagttagggag
gcctatagaatatggaaagatgattatgaccgagtaaagatggctagaaagagtgctagc
agcatctaa
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