Phragmites australis (common reed): 133912488
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Entry
133912488 CDS
T10575
Name
(RefSeq) serine/arginine-rich splicing factor SR34A-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133912488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133912488
Spliceosome [BR:
paua03041
]
Common components
Common spliceosomal components
SR proteins
133912488
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
RRM_3
QWRF
Motif
Other DBs
NCBI-GeneID:
133912488
NCBI-ProteinID:
XP_062211225
LinkDB
All DBs
Position
3:17708176..17712496
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AA seq
252 aa
AA seq
DB search
MSRRWSRTIYVGNLPGDIREREVEDLFHKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAED
AIAGRDGYNFDGNRLRVEPAHGGRGNASSNDRSSGFGGGARRGVSRHSDYRVLVSGLPSS
ASWQDLKDHMRKAGDVCFSEVYREGGGTLGIVDYSNYDDMKYAIKKLDDTEFRNAFGRAY
IRVKEYDGKRGRSSRSRSPSRSYSRSRSPSKSPRARRSASRSRSRSVSSRSRSASKGRSP
SSQYSLAWEESC
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggcgctggagccggacgatctatgtcgggaacctccccggcgacatccgggag
agggaggtggaagatctgttccacaagtatgggagaattgttgacattgacttgaagatc
cccccgaggccgcctggttatgcttttgttgagtttgaagatcctcgtgatgccgaagat
gcaattgctggaagggatggctacaactttgatggaaatcgtctaagagtggaacctgca
catggtggtagaggtaatgcttcctcgaacgatcgttcaagtggctttggtggcggagca
cgccgtggtgtgtctaggcactcagactatcgtgttcttgttagtggactgccttcttct
gcatcatggcaagatctaaaggaccatatgaggaaagcaggtgatgtctgtttctctgaa
gtttaccgtgaaggcggtggcaccttagggattgtggactactcaaactatgatgatatg
aaatatgctataaagaaactggatgatactgaattcaggaatgcctttggtcgagcttat
ataagggtgaaggaatatgacggcaaacgtggccgctcatcacgtagccgaagcccaagt
cgtagctacagcagaagcaggagcccatcaaaatctcccagggctcgtcgttcagcatct
agatcccgttcgaggtctgtttcttcccgttcaaggtcagcatcaaaaggacgttcccca
tcaagccaatattcattggcctgggaggaaagctgctga
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