Phragmites australis (common reed): 133912504
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Entry
133912504 CDS
T10575
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133912504
09122 Translation
03013 Nucleocytoplasmic transport
133912504
03015 mRNA surveillance pathway
133912504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133912504
03041 Spliceosome [BR:
paua03041
]
133912504
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
133912504
Spliceosome [BR:
paua03041
]
Common components
Common spliceosomal components
Cap binding complex
133912504
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
DUF7935
Motif
Other DBs
NCBI-GeneID:
133912504
NCBI-ProteinID:
XP_062211258
LinkDB
All DBs
Position
3:18016684..18039140
Genome browser
AA seq
866 aa
AA seq
DB search
MSAGWRTLLLRIGDRCPEYGGSADHKEHIETCYGVLCREYEHSKEAIFEFLLQCAEQLPH
KIPFFGVLIGLINLENEDFAKDIVDTTHANLQDALHNENHDRIRILLRFLSGLMCSKVVV
PNSLIETFETLLSSAATILDEETGNPSWQPRADFYVYCILASLPWGGPELFEQVPDEFER
VLVGIQSYISIRRHFDDIAFSVFETDEGHSPNKKDFMEDLWELIQVLSRNGWKVKSVPKP
HLSFEAQLVSGKSHRLSPISCPPPSLSQSSSEILKGQEKHEADLKYPQRLRRLHIFPTNK
AENMQPVDRFVVEECMLDVLLFFNGCRKECAFYLVSLPVSFRYEYLMAETIFSQLLLLPN
PPFKPIYYTLVIIDLCKALPGAFPSVVVGAVHALFDRISNMDMECRTRLILWFSHHLSNF
QFIWPWQEWSYVKDLPKWAPQRVFVQEVLEREVRLSYFEKIKQSIEDAAELEELLPPKAG
PKFKYHSDESNENTDGHRVSKELVGMVRGKKTARDIILWVEEHIIPTNGAEFALGVVSQT
LLDIGSKSFTHLITVLERYGQIISKLCPNEEMQLLLMDEVSAYWKNSTQMTAIAIDRMMG
YRLISNLAIVKWVFSPANVDQFHVSDRPWEILRNAVSKTYNRISDLRKEIQSLKKGLQVA
KVVSGKAIKELEEAKSVLAIAEGQPAPAERPGRLRRLQVYADKAKQEEISTEESLEAKGA
LLARGLEESKELIKLLFKSFVDVLTERLPPVSSDGEIPNLRAGDLNVNFAARDPETATME
IDNENGADNSEPNGQNPKNDYKVGELEQWCLCALGYLKSFSRQYATEIWSHIAMLDEEVF
VGDIHPLIRKAAFSGLCRFTREGSHL
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgggctggaggacgctgctgctgcgcatcggcgaccggtgccccgagtacggg
ggctccgccgaccacaaggagcacatcgaaacttgttatggtgtactatgtagagaatat
gaacactccaaagaggccatatttgagtttctccttcagtgcgctgaacagttgcctcac
aagattcctttctttggagttttgattggtttgataaacttagaaaatgaagacttcgcc
aaggatattgtagataccacacatgccaacttacaagatgccttgcataatgaaaatcat
gatagaattaggatattgctgcgatttctcagtggcctgatgtgcagcaaagttgtcgtt
ccaaattctttaattgagacatttgagactctattatcatctgctgcaacaatattagat
gaggagactggaaatccatcgtggcaaccacgtgctgacttttatgtttattgtattttg
gcctctcttccatggggtggtccagaattgtttgagcaagttccagatgagtttgagaga
gttttggttggtatacagtcttacataagcatcagaaggcattttgatgatattgctttc
tcagtctttgagacggatgaaggccactctcccaacaaaaaggatttcatggaagaccta
tgggagctcattcaagttctttctcgcaatggatggaaagttaaaagtgttccaaaaccc
cacttgtcatttgaagctcagttggtgtctggaaaatctcatcgtctttccccgattagt
tgtcctccgcctagtctctcgcagtcatcttctgaaatattaaaagggcaggagaaacac
gaagctgatctgaagtatcctcaaagacttcgcagactccatatctttccaacaaataaa
gccgagaacatgcaaccagtagatcgttttgttgttgaagaatgcatgttggatgtgctg
cttttcttcaatggatgtcgaaaagaatgtgcgttttatctggtcagcctgcctgtgtct
ttccgctatgaatacctgatggctgaaaccatattttcacagctattattgttgccgaat
ccgcctttcaagccaatttactatacattggttatcatcgacctttgcaaggcattgcca
ggtgcatttccttcggttgtggtaggagcagtgcatgctctttttgacagaattagcaac
atggacatggagtgccgcaccagacttatcctatggttttcacatcatttgtcaaatttt
caatttatttggccttggcaggagtggtcttatgttaaggacctcccaaaatgggctcca
caacgagtttttgtccaagaagtattggaaagggaagtacgcctgtcctacttcgaaaaa
atcaagcagagtattgaggatgctgctgaattggaagaactgttacccccaaaagctggg
cctaagttcaaataccacagtgatgaaagcaatgaaaacacagatggccatagagtatct
aaggaacttgttggcatggttagaggaaagaagactgcacgtgatattattttatgggtg
gaggaacatataattccaaccaatggtgctgaatttgcactcggtgttgttagtcagaca
cttcttgacatcggctcgaaaagtttcacccatcttatcactgttttggagagatatggt
caaataatctctaagctatgtccaaatgaggaaatgcagttactgttgatggatgaagtt
agtgcttattggaagaacagtacccagatgactgctatagctattgatagaatgatgggt
tatcgcctgatatccaatttggctatagtcaaatgggttttttctcctgccaatgttgac
caatttcatgtttctgatcgcccatgggagattcttagaaatgctgttagtaaaacatac
aatcggatcagtgacctccggaaggaaattcagtctctcaagaaaggtcttcaagttgct
aaagtggtcagtggaaaagccataaaagagttggaggaggctaaatcagtacttgcgatt
gcagaggggcaacctgctccagccgaaagaccaggtaggctaaggcgactccaagtatat
gctgacaaggcaaaacaagaggaaatatccactgaagaatctttagaagctaagggagcc
ctccttgctcggggtctagaagaaagcaaggaattgattaagttgctatttaagagcttt
gttgacgtgctcacagaacgtttgccacctgtttcttctgatggagagattcctaatcta
cgcgctggagatctgaatgtaaattttgctgcccgcgatcctgaaacggcgacaatggag
atcgacaatgaaaatggagcagataatagtgaaccaaatgggcaaaacccaaaaaatgac
tacaaagttggagagcttgagcaatggtgtctttgtgcactgggttatctcaagtcattt
tctcgccaatatgcgaccgagatttggtctcacattgcaatgttggatgaggaggttttc
gttggggatattcaccctcttatcagaaaagctgctttctctggtttgtgcagatttact
agagaaggttctcacctttga
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