Phragmites australis (common reed): 133912526
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Entry
133912526 CDS
T10575
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133912526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133912526
Spliceosome [BR:
paua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
133912526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
ANAPC4_WD40
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
PRP4
Beta-prop_EIPR1
Beta-prop_WDR41
WD_LRWD1
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_WDR75_2nd
Beta-prop_Nup120_160
eIF2A
Tricorn_2nd
WD40_like
Beta-prop_NUP159_NUP214
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
133912526
NCBI-ProteinID:
XP_062211298
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Position
3:18549810..18553684
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AA seq
516 aa
AA seq
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MENPRPQAPAPTPPMAPLPVPVHPPIAPIPVPPPRAPAAAASTSASGGGEAGYEVSDDHR
AARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLYGEREMERRDRLRALM
VRLEADGQVDRLLRAQEDDQAAAAGAGEEDDEQIQYPFFTEGTQELLKARVDIAQYSLPR
AKARIERAKRRHDDPDEDPEAEADLVVKQAGEFVLECSEIGDDRPLTGCSFSRDASMLAT
SSWSGMIKVWSMPQITKVATLKGHTERATDVAFSPADDCLATASADKTAKLWKPDGSLLM
SFDGHLDRLARLAFHPSGMYLGTASYDKTWRLWDINTGKELLLQEGHSRNVYGVSFHPDG
SLAASCGLDAYARVWDLRSGRLFFTLRGHVKPVLGVSFSPNGYLVATGSEDNFCRIWDLR
KREMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKASLWSARDYKPIKSLAGHESKVTS
LDISGDGQQIVTVSHDRTIKIWSCRSSTQDNAMELD
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccaggccccaggctcccgcccccacgccacccatggccccgctccccgtg
cccgtccacccgcccatcgcccccatccccgtccctcctccccgcgcgcccgctgccgcg
gcctccacctccgcttccgggggcggcgaggccgggtacgaggtctcggacgaccaccgt
gccgcgcgggagcgccacgagcgcgcggtgcaggagctcctccagcggcgccgcgcctac
gccatggccgtgcccaccaacgactccgccgtgcgcgcgcgcctccgccgcctgggagag
cccatcacgctctacggcgagcgggagatggagcgccgcgaccgcctccgcgcgctcatg
gtccgcctcgaggccgacggccaggtcgaccgcctcctccgcgcgcaggaggacgaccag
gccgctgcggcgggcgccggcgaggaggacgatgagcagatccagtaccccttcttcacc
gagggcacgcaagagctgctcaaggcgcgtgtcgacatcgcgcagtactcgttgccccgc
gccaaggccaggatcgagagggccaagcgccgtcacgacgaccccgacgaggacccggag
gcggaggctgacctcgtcgtgaagcaggcaggggagtttgtactcgagtgcagcgagatt
ggagatgaccgcccgctcaccggctgctccttctctcgcgatgcgtcaatgctcgccaca
agttcctggagtggaatgatcaaagtttggagcatgccacagataactaaagttgcaacc
ctgaaaggtcatacagaacgtgcaactgatgttgccttttctccagctgatgactgctta
gcaacggcttcagctgataaaaccgcaaaactatggaaaccagatgggtcacttttaatg
tcctttgatggtcaccttgatcgtcttgctcgacttgcttttcatccatctggaatgtac
cttggtacagctagctatgacaagacttggagattatgggacatcaatactggaaaggaa
ctgctactccaagaggggcacagcagaaacgtttatggagttagctttcacccagatggt
tctttggcggcatcttgtggtcttgatgcatatgctcgagtatgggatctaagatcagga
agattgttcttcacccttagggggcatgtgaaacctgtcctaggagtcagcttctcccct
aatggttatctggtggcaactggaagtgaagacaatttctgtcgaatatgggatttgagg
aagagagaaatgttatattccataccagctcataagagtcttatttcacatgtgaaattt
gaaccccaagaagggtattatttagcgacttcttcctatgacaccaaagcatcgctgtgg
tcagctcgggattacaaaccaatcaaaagtttggcgggccacgagtcaaaggttactagt
ctggatattagtggagatggacagcagattgtgactgtgtcacatgatcgtacgataaag
atttggtcatgcagaagcagcacgcaggataatgctatggaattggactga
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