Phragmites australis (common reed): 133912647
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Entry
133912647 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133912647
KO
K12816
pre-mRNA-processing factor 17
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133912647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133912647
Spliceosome [BR:
paua03041
]
Complex C
Other components
Step II factors
133912647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
eIF2A
Beta-prop_Vps41
Beta-prop_NWD2_C
Beta-prop_SCAP
AC_N
Motif
Other DBs
NCBI-GeneID:
133912647
NCBI-ProteinID:
XP_062211482
LinkDB
All DBs
Position
3:22366828..22370604
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AA seq
569 aa
AA seq
DB search
MDLLQSSYAPDDEEAAAASSPDSSPLRLPSKSAAPAVDDTALALSAAASTSRPLDPSLHL
VAFNPTADQLWAPVLGPQHPHAPISSASGNRNHKLGHVEDAAVLPFLFDEQYNTFHRFGY
AADPSGLHIVGDAQPKAPDPDTVYNLRPSEHKRRRLQSKTDNQDEEPLPPEATNPASDEW
ILHNKKSPWAGKKEGPPEELTDEQRQYAEAHAAKKAEKEARGEGKGEKAEIVVKSTFHGK
EERDYQGRSWITPPKDAKATNDHCYIPKRCVHEWVGHTKGVSAIRFFPKYGHLLLSASMD
CKIKIWDVLESRTCMRTYMGHSKAVRDISFSNDGTKFLSAGYDRNIQYWDTETGQVISTF
STGKVPYVVKLNPDEDKQHILLAGMSDKKIVQWDMKSGQITQEYDQHLGAVNTITFVDNN
RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIALHPNSNWLAAQSLDNQILIYST
KERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGSCWFWDWKSCRRFKTLKCHN
GVCIGCEWHPLETSKVATCGWDGVIKYWD
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccagtcctcgtacgcgccggacgacgaggaggcggcggcggcgtcctcc
ccggactcgtcccctctccgcctcccctccaaatcggctgcccccgccgtcgacgacact
gcgctggccctctctgccgccgcctccacctcccgcccgctcgacccctcgctccaccta
gtcgccttcaaccccaccgccgaccagctctgggcacccgtcctcgggccccagcacccc
cacgcccccatctcctccgcatccggcaaccgcaaccacaagctcggccacgtcgaggat
gccgcggtcctccccttcctcttcgacgagcagtacaacaccttccaccgattcggctac
gccgccgacccctccggcctccacatcgtcggcgacgcgcagcccaaggcgcccgacccc
gacaccgtctacaacctccgcccctccgagcacaagcgccgccgcctccagtccaagacg
gacaaccaggacgaggagcccctcccgccggaagccacaaacccggcctccgacgagtgg
atcctccacaacaagaagagcccctgggcgggcaagaaggagggaccgcccgaagagctc
accgacgagcagaggcagtacgctgaggcgcacgccgccaagaaggctgagaaggaggcc
cgcggcgaagggaagggagagaaggcggagattgtggtcaagagcaccttccacgggaag
gaggagagggactaccagggacggtcgtggatcacgccgcccaaggatgccaaggcgacc
aacgaccactgctacatccccaagaggtgtgtgcatgagtgggtcgggcacaccaaaggg
gtctcggcgatcagattttttccaaagtatgggcacctgttgctgtctgcgagtatggat
tgtaagattaagatctgggatgtgcttgagtcacggacgtgtatgcgcacatacatgggg
cactcaaaggcggtgagggatatatcgttctccaatgatgggaccaagttcttgagtgct
gggtatgacaggaatatacagtactgggataccgagacagggcaggtgatctcgaccttt
tctactgggaaagtcccttatgttgtgaagctgaatcctgatgaggataagcagcatatt
ctccttgcgggaatgagcgacaagaagattgtgcaatgggatatgaaatcaggccagatc
acgcaggagtatgatcagcatttaggggctgtgaacaccataacattcgtagataataat
aggaggtttgtgacgtccagtgatgacaagtctcttcgtgtgtgggaatttggcatccct
gtggtgattaagtatatcagcgagccacacatgcactcaatgccatccattgcactgcac
ccgaactccaactggctggctgcacagagcttggacaatcagatactgatatacagcaca
aaggagaggttccagcttaataagaagaagagatttgctggccacattgtggctggttat
gcttgtcaggtgaatttctctcctgatgggaggtttgtaatgtcaggagatggtgagggt
agttgctggttctgggattggaaaagctgcaggagatttaagacattgaagtgccacaac
ggagtttgcattggatgcgagtggcacccattggaaactagcaaggttgcaacatgcgga
tgggatggtgtaattaaatactgggattga
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