Phragmites australis (common reed): 133912932
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Entry
133912932 CDS
T10575
Name
(RefSeq) histone-binding protein MSI1 homolog
KO
K10752
histone-binding protein RBBP4
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
paua03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133912932
03083 Polycomb repressive complex
133912932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
paua03036
]
133912932
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
133912932
Histone modification proteins
HAT complexes
HATB complex
133912932
HDAC complexes
Sin3A-HDAC complex
133912932
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
133912932
PRC2.2
133912932
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
133912932
Heterochromatin formation proteins
Other heterochromatin formation proteins
133912932
Chromatin remodeling factors
NuRD complex
133912932
NuRF complex
133912932
NuRF complex (fruit fly)
133912932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
EIF3I
WD40_RFWD3
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
eIF2A
WD_LRWD1
Beta-prop_HPS5
Beta-prop_RIG_1st
MIOS_WD40
NBCH_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
133912932
NCBI-ProteinID:
XP_062211900
LinkDB
All DBs
Position
3:complement(36607822..36621541)
Genome browser
AA seq
431 aa
AA seq
DB search
MPKAGGGAADEEEFRAEVEDRLVNEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRA
EPPGKDHSVQKMILGTHTSDNEPNYLMLAQVQLPLDDAEADARHYDDDHADIGGFGAASG
KVQIVQQINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRL
KGHNSEGYGLSWSIFKEGHLLSGSDDAQICLWDIKTNSKNKSLDALQIFKHHDGVVEDVA
WHLRHEYLFGSVGDDRHLLIWDLRSPAPTKPVQSVVAHQGEVNCLAFNPFNEWVVATGST
DKTVKLFDLRKIDTSLHTFDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQ
TPEDAEDGPPELMFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDD
LPISDEPAKAS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggccggcggtggggcggcggacgaggaagagttccgcgccgaggtggaggat
cgcctcgtcaacgaggagtacaagatctggaagaagaacacgcccttcctctacgacctc
gtcatcacgcacgcgctcgaatggccctccctcaccgtgcagtggctccccgaccgcgcc
gagccgcccggcaaggaccactccgtccagaagatgatcctcgggacgcacacctccgac
aacgagcccaactacctcatgctcgcgcaggtccagctacccctcgacgacgccgaggcc
gacgcgcgccactacgacgacgaccacgccgacatcggggggttcggcgccgcctccggc
aaggtgcaaatagttcaacagataaatcatgatggcgaggttaatcgagctcgctatatg
ccccaaaattcatttataattgctaccaagactgttagtgcagaagtatatgttttcgac
tatagcaagcacccatcaaagcctccactagatggtgcgtgcaatcctgatttacggctg
aagggacataactctgaaggatatggcttatcctggagtattttcaaagagggacatctg
ttgagtggatctgatgatgctcaaatttgcttgtgggacattaaaaccaacagtaaaaac
aaaagtcttgatgctcttcagatttttaagcatcatgatggtgtcgttgaagatgtcgct
tggcatttgaggcatgaatacttgtttggctcagttggggatgatcgtcatcttctgatt
tgggatttgcggtctcccgcacctactaagcctgtacagtccgtagtggcacaccagggt
gaggtgaactgcctggctttcaatcccttcaacgaatgggttgtcgcaactggttctact
gataaaactgtcaaattatttgatcttaggaagattgatacttccctgcacaccttcgac
tgtcacaaagaggaagtattccaagttggatggagcccaaagaatgagactatacttgct
tcttgttgcctgggcagaagactaatggtctgggacctaagcagaattgatcaagaacaa
acaccagaggatgcggaagacggccctccggagctcatgttcattcacgggggccataca
agcaagatctctgatttctcctggaacccatgcgaggattgggtgattgctagcgtagct
gaagacaacatccttcagatatggcagatggcagagaacatctaccatgacgaagatgat
ctgccgataagtgatgagccggcaaaggcttcttga
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