Phragmites australis (common reed): 133912968
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Entry
133912968 CDS
T10575
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133912968
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133912968
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NCBI-GeneID:
133912968
NCBI-ProteinID:
XP_062211959
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Position
3:37803559..37813981
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AA seq
864 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSDLESQIDNFEAEIEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSSLVKGVATVSTSAVLSTKSSVATSPTQPTVSTAPVQGTSQDQAEETASQE
SNPDSTPQTPPSKGGNLGPSVPVVPIAVSTGTAAVSVSAETINSPVRPVVPTTAAAILSA
SATARSAPESTPAVTSTPANLFSTLKDDDSLSVPPRRPSPVITEIGIGRGIPRGITSQTL
GAAPISIGPVPGNGSVSALPAINDLSKRNLLNTDERINSGGLPQQLVSPLGNKVQPQQIP
RANDAISSDSANTNENAILGGRVFSPPVVSGVQWRPQTTAAFQNQSETGQFRGRPEISAD
QREKYLQRLQQVQQQGSLLNVSHLTGINQKQFPTQQPNPLLQQFNSQSSSVSSQVSLGLG
VQGPDAGHMKSEEQQQSLAEDVGVESAPTTGANKHTNEDDTKIPFSNPPASATESTQLSR
DSDLSPGQPLQPGMPSSGVGVIGRRSVSDFGAIGDNLTGTSASSGHDQLYNLQMLEAAYH
KLPQPKDSERAKNYVPRHPAVTPASYPQIQAPIVSNPTFWERIGSDTLATDMLFFAFYYQ
QNTYQQYLAARELKKQSWRFHRRYNTWFQRHVEPQVTTDEYERGSYVYFDFHVTDDGSGW
CQRIKNDFTFEYNYLEDELSVQTN
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtcctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggcggacctcaagaaggagatcaagaagctgcagcggtacagggac
cagatcaagacgtggatccagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctcttatggatgcccggaagcagattgaacgagagatggaacgatttaaagtt
tgtgagaaggaaacaaaaaccaaggccttctcaaaagaagggttaggtcagcaaccaaaa
actgatcccaaagagaaggccaaagctgaaacaagagactggcttaacaatgtggttagt
gatttagaaagccagattgataactttgaagcagagattgaagggctttcaattaaaaag
ggaaagcaaagaccgcctcgattggtacatttggagaaatctattacgcggcataaagct
catataaagaaattggagtcgatcttgaggcttttggataacgatgagttgagtcctgag
caagtcaatgatgttaaagatttcttggatgactatgttgaacgtaaccaggaagacttt
gatgaattcagtgatgttgaggacctatatagcacattgcctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttccagccttgttaagggtgttgctactgtttcg
actagtgcagttttgagcacgaagagttcagttgcaacttcacctactcagcctactgta
tcaacagctcctgtacaaggtacatcacaagatcaagcagaggagacagcttcacaagaa
agcaatcctgattctacaccacagacaccaccttcaaaaggtggaaatcttggaccttca
gtgccagttgtgcccattgctgtcagtaccggtactgcggctgtttctgtctctgcagaa
acaattaattctcctgtacgacccgttgttcctaccacagcagctgcaatactttctgcg
tctgctactgcacgaagtgctccggagagtacgcctgctgttacctcaactcctgcaaac
ttatttagcaccttgaaggatgatgacagcttgagcgttcctccacggagaccatctcct
gttattaccgaaattggaattggcaggggtatccctcgaggaataactagtcagacatta
ggtgcagctcccataagtataggtccagtcccgggaaatggatcagttagtgcacttcct
gcaataaatgacttgtccaaaagaaatctattgaatactgatgagaggattaacagcggt
ggtcttcctcagcagttggtttcgcctcttggtaataaagttcaaccacagcagattcca
agggcaaacgatgcaattagttctgattctgccaatacaaatgaaaacgcaattcttgga
ggaagagtcttttctcctccagttgtttctggggttcaatggagacctcaaaccactgct
gcctttcaaaatcaaagtgaaactggccagtttcgtggaagacctgagatttctgccgac
caaagggagaagtacttgcaaagattgcagcaagtacagcagcaaggcagccttcttaat
gtttctcatttaactggcataaatcagaagcaatttccgacacagcagccaaatcccctt
ctacaacagtttaattctcagagttcctctgtatcctcccaagtgagccttgggcttgga
gttcaaggaccagatgctgggcatatgaaaagtgaagaacaacaacaaagtttggctgaa
gatgttggtgtggaatctgctccaacaactggagcaaataaacacaccaatgaagatgac
acaaagattccattttcgaatcctccagcatctgcaacagagagcactcagctatctaga
gactctgatctatcgcctgggcagcctttgcaacctggaatgccatcatctggtgtcggt
gtcattggccgaagaagtgtatctgattttggtgcaatcggagataacctcactggaact
tctgcaagttctggtcatgatcagctttataatttgcaaatgctcgaagctgcataccac
aagcttccacaacccaaggactcagagcgtgctaagaattatgttccgcggcacccagca
gtcacccctgctagttacccccaaattcaggcaccgattgtatcgaatcccaccttctgg
gaaaggattggcagtgacacattagctacggatatgcttttctttgcattctattatcaa
cagaacacataccaacaatatttggctgctagagaactcaagaaacaatcatggagattc
cacaggaggtacaacacttggttccagcggcatgtggagccacaagttacgactgatgag
tatgagcggggatcctatgtatactttgatttccatgtcacagatgatggctcaggatgg
tgccaaagaatcaagaatgacttcacatttgagtacaactaccttgaggatgagttatca
gtacagacaaactag
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