Phragmites australis (common reed): 133913040
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Entry
133913040 CDS
T10575
Name
(RefSeq) protein argonaute 12-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133913040
03036 Chromosome and associated proteins [BR:
paua03036
]
133913040
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133913040
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133913040
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
133913040
microRNA pathway
RISC loading complex
133913040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoMid
ArgoL2
Motif
Other DBs
NCBI-GeneID:
133913040
NCBI-ProteinID:
XP_062212055
LinkDB
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Position
3:complement(39811153..39819120)
Genome browser
AA seq
1017 aa
AA seq
DB search
MSTRGGGGRGRGRGDHGGGRGGGGGGRGRDQGDAEPREHRDATRGRGGRGDRGGRGAGES
GGHFQAPQSAGGRGGYSGVAQGRGQVAAPTPAEVEALSRQVEKRMVVATAQAGPHPQVGP
SFPAPARAPAPAAAARVEGKGTVESLAASAGRLPPASSKALVFPARPGYGTIGRRCRVRA
NHFLVQVADKDIYHYDVAITPESNSRERNRWIVNELIKLHKQYLNGRLPVYDGRKGMFTA
GPLPFKEKQFLLKLTNPERANQREKEYKVTIKDAAKIDLYSLKQFLAGRQRELPQDTIQA
LDIALRECPSARYVTVSRSFFSQAFGHGGPIGSGVECWRGYYQSLRPTQMGLSLNIDISA
TAFYKPQPIIEFAVEYLNLRDASKRLSDLDRIKLKKALKGVRVVVTHRRDIPMHYRITGI
TSAPLNDLTFDQDGTRVSVVQYFKRQYNYSLKHTHWPCLQAGSDSRPAYIPMEVCNILEG
QRYSRKLNERQVTAILKLACERPAQRESSILEVASSNNYDNDYYAKEFGIKVMNQPALVD
ARVLPAPRLKYHDSGKEKVCNPSIGQWNMINKRMVNGGSIKHWACLTFASRLRPNDIGMF
CNDLVSMCNNIGMQMNTRPCVDIKQARQDNVEAAITSIHRHSAEVLAQQGLKEQQLELLI
IILPDMSGFYGRIKRLCETELGVITQCCAPKNVLKGGKQYLENLALKINVKVGGRNTVLE
DALNKRIPLLTDFPTIVFGADVTHPSPGEGSSPSIAAVVASMDWPQVTKYKCLVSSQGHR
DEIINNLFTEVRDPEKGIVRGGMVRDLLVSFYKSTGHKPYRIIFYRDGVSEGQFSQVLLY
EMDAIRKACASLQEGYLPKVTFVVVQKRHHTRLFPENHRARDQTDRSGNILPGTVVDTKI
CHPSEFDFYLCSHSGIQGTSRPAHYHILFDENGFSADALQTLTYNLCYTYARCTRSVSIV
PPAYYAHLGAFRARYYMEDDNSDQGSSGATSRTYDQSVPVRQLPRIKENVQQFMFYC
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcgcggcggaggcggtcgagggcggggccggggcgaccacggaggaggccgt
ggaggtggcggtggcggtagagggcgagaccaaggcgatgcggagccccgggagcaccgc
gatgccacgcgcggccgaggtggccgtggtgaccgcggcggccgtggcgcaggcgagagt
ggggggcacttccaggccccccagtcggccggcgggcgcggtggatacagtggcgtggct
caggggcgcgggcaggtggccgcgccgacgccggcggaggttgaggcgctgagccgccag
gtggagaagagaatggtggtcgcaacggcacaggctgggccgcacccgcaagtgggcccg
tcgttcccggctccggcgcgggctccggcgcctgcagccgccgcgcgagtggagggaaaa
gggacggtggagtcgttggcggcgtctgcagggaggcttcctccggcgtcgagcaaggcg
ttggtgttccccgcgaggccggggtatgggacgatcgggcggaggtgccgcgtgcgcgcc
aaccatttcctcgtccaggtcgcggacaaggacatttaccactacgacgtggccatcact
cctgaatccaattcacgggaaaggaacagatggatagttaacgagctcattaaattgcac
aaacaatatttgaacgggcgactgcctgtttatgatggaagaaagggtatgttcacagct
ggtccactgccattcaaagagaaacagtttcttctcaaactaacaaatcctgagagagca
aaccagagggagaaagagtacaaggtcactatcaaggacgctgcaaaaatagatctgtac
agccttaagcagttcttggctggtaggcagagggaactgccacaggacaccatccaagct
cttgacatcgctctgagggaatgcccaagtgctaggtatgtaacggtctcaagatcattt
ttctcacaagcatttggacatggtgggcctatcggaagtggtgtggaatgctggaggggt
tactaccaaagcttacgccctacccagatgggactgtccctaaatattgatatttctgcg
acagcattttacaagcctcaacccattatagaatttgcagtggagtatctgaacttgcgt
gatgcatcaaagcgtttgtctgatctggatcgcataaaactgaagaaagcccttaaggga
gtccgggttgtggtcacacatcgccgtgatatacccatgcattacaggattacagggatt
acctcagctccgttgaatgatttgacgtttgatcaagatggcacaagggtatcagttgtc
cagtactttaaacggcaatataattactctttgaaacacactcactggccatgtcttcaa
gctggcagtgatagcaggccggcatatatacctatggaggtttgcaacatccttgaggga
caacgctactctagaaagctaaatgagcgtcaagtcacagctatcctgaagttggcctgt
gagcgaccagcacaaagggagagcagtattttggaggttgctagtagtaacaactatgac
aatgactactatgcaaaagaatttggcattaaggtgatgaaccaacccgccttggttgat
gctcgtgtgctcccagctccaaggcttaaataccatgactctggaaaagaaaaagtatgc
aacccttccattggccagtggaacatgattaacaagagaatggttaatggaggatctatc
aaacactgggcatgtctaacttttgcctctcgcttgcgtccaaatgacattgggatgttt
tgcaacgatcttgtcagcatgtgcaataacattggcatgcaaatgaataccagaccatgt
gtggatatcaagcaagcccgccaagacaatgtagaagccgcaatcacaagtatacatcgt
cattctgctgaagtgcttgctcaacaaggtctgaaagagcaacaacttgagttacttatc
ataattttgcccgatatgagtggtttttatggaaggataaaacgactttgtgaaactgag
cttggtgtaataactcaatgttgcgcgcctaagaatgttctgaaaggaggaaaacagtat
cttgaaaatcttgctctgaaaatcaacgttaaggttggaggtcggaatactgtgcttgaa
gatgctttgaacaagagaataccactactgacagattttcctacaatagtctttggagct
gatgttacccacccgtctcctggggagggttcatctccatctattgcagcggtcgttgca
tccatggattggccacaagttaccaagtacaaatgcttggtatcttcacaaggtcatagg
gacgaaatcataaataatcttttcacagaagtgagagatccagagaaaggcattgtaaga
ggtggaatggttagggatttgctcgtgtcattctacaagtctactggccacaagccttac
aggattatattctatcgagatggtgttagtgaggggcagttcagccaagtcttgctttat
gaaatggacgcaattcgcaaggcatgtgctagtttacaggagggctatctacctaaagtc
acttttgttgttgtgcaaaagaggcatcacacccgcctgtttcctgaaaatcatcgtgcg
cgtgatcagacagataggagcggaaacatcctacctggaactgttgttgacacaaagatc
tgccatcccagcgagtttgatttttacctctgtagtcattctggtatccagggaactagc
cgcccagcacattatcacattcttttcgatgaaaatggtttcagtgctgatgcactgcaa
accttgacttacaatctttgttacacctatgccaggtgcactcgctcagtctctatagtt
cctccggcgtattatgcacacctgggtgcctttcgtgcgcgttactacatggaggacgac
aactctgatcagggctcatctggggcaacatctcggacatatgatcaatctgtccccgtg
aggcaactccccagaattaaggaaaacgtccagcagttcatgttttactgctga
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